Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3023 113 9e-20 seq3383 93.3 9e-14 seq3191 91.5 3e-13 seq3134 89.7 1e-12 seq3289 84.2 4e-11 >seq3023 Length=5802038 Score = 113 bits (124), Expect = 9e-20 Identities = 293/444 (66%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 || ||||| || ||||| ||||||||||||| ||||| ||||| ||| || | ||| Sbjct 629305 GAACGTTCCATACCCAGTCTGGTGGATGGCCTTAAGCCCGGTCAGCGCAAGGTCATGTTT 629246 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682 | |||||||| ||| | || | || || || || || || |||| || Sbjct 629245 ACGTGCTTCAAGCGTAACGATAAGCGTGAGGTGAAAGTGGCCCAATTGTCGGGTTCGGTG 629186 Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATG 218742 | ||||| || | ||| |||||||| ||| | |||||| ||||||| || Sbjct 629185 GCTGAAATGTCAGCCTATCATCACGGCGAGATGTCCCTGCAGATGACCATTGTGAATTTG 629126 Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 |||||| | | ||||||| ||||| || || ||| || || ||||||||| ||| Sbjct 629125 GCACAGAATTTTGTGGGCTCAAACAATATCAATTTGTTGGAGCCGCGCGGTCAGTTCGGT 629066 Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCG 218862 | ||||| ||||| |||||| |||| || | ||||| || ||| | ||||| Sbjct 629065 ACACGTCTCACTGGTGGCAAGGATTGTGCGAGCGCTCGTTATATTTTCACATTGATGTCG 629006 Query 218863 CCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922 || | || || | | | ||| | |||||| || || |||||| | || Sbjct 629005 CCGCTAACACGTCTCATCTATCATCCGTTGGATGATCCCCTGCTGCAGTATCAGGTCGAT 628946 Query 218923 GATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAA 218981 ||||| || || |||||||| |||||| | || ||| ||| | | || || || Sbjct 628945 GATGG-TCAGCGCATTGAGCCAATTTGGTATATTCCCATTATACCGATGGTACTGGTGAA 628887 Query 218982 TGGTGCCAATGGTATCGGGACAGG 219005 ||| ||| | || ||||| || || Sbjct 628886 TGGCGCCGAGGGCATCGGCACTGG 628863 >seq3383 Length=19223366 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 479874 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 479815 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 479814 GAGCCCCACGTTGGGC 479799 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 10824863 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 10824922 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 10824923 CCCCACGTTGGGC 10824935 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 12861026 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 12860967 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 12860966 CCCACGTTGGGC 12860955 >seq3191 Length=20611582 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4746536 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4746477 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 4746476 CCCACGTTGGGCGAAAGT 4746459 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 4779402 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4779343 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 4779342 CCCCACGTTGGGC 4779330 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 4780063 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4780122 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 4780123 CCCCACGTTGGGC 4780135 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 5948861 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 5948802 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 5948801 CCCCACGTTGGGC 5948789 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3964941 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3964882 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3964881 CCCACGTTGGGC 3964870 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4781439 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4781498 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4781499 CCCACGTTGGGC 4781510 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4798340 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4798399 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4798400 CCCACGTTGGGC 4798411 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 12904338 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 12904397 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 12904398 CCCCGCAAGGGA 12904409 >seq3134 Length=2474545 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1628869 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1628928 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1628929 CCCACGTTGGGC 1628940 >seq3289 Length=20206255 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 12645488 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 12645429 Query 142117 CCAG 142120 | || Sbjct 12645428 CAAG 12645425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027658621278730