Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3023 113 9e-20
seq3383 93.3 9e-14
seq3191 91.5 3e-13
seq3134 89.7 1e-12
seq3289 84.2 4e-11
>seq3023
Length=5802038
Score = 113 bits (124), Expect = 9e-20
Identities = 293/444 (66%), Gaps = 2/444 (0%)
Strand=Plus/Minus
Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622
|| ||||| || ||||| ||||||||||||| ||||| ||||| ||| || | |||
Sbjct 629305 GAACGTTCCATACCCAGTCTGGTGGATGGCCTTAAGCCCGGTCAGCGCAAGGTCATGTTT 629246
Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682
| |||||||| ||| | || | || || || || || || |||| ||
Sbjct 629245 ACGTGCTTCAAGCGTAACGATAAGCGTGAGGTGAAAGTGGCCCAATTGTCGGGTTCGGTG 629186
Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATG 218742
| ||||| || | ||| |||||||| ||| | |||||| ||||||| ||
Sbjct 629185 GCTGAAATGTCAGCCTATCATCACGGCGAGATGTCCCTGCAGATGACCATTGTGAATTTG 629126
Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802
|||||| | | ||||||| ||||| || || ||| || || ||||||||| |||
Sbjct 629125 GCACAGAATTTTGTGGGCTCAAACAATATCAATTTGTTGGAGCCGCGCGGTCAGTTCGGT 629066
Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCG 218862
| ||||| ||||| |||||| |||| || | ||||| || ||| | |||||
Sbjct 629065 ACACGTCTCACTGGTGGCAAGGATTGTGCGAGCGCTCGTTATATTTTCACATTGATGTCG 629006
Query 218863 CCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922
|| | || || | | | ||| | |||||| || || |||||| | ||
Sbjct 629005 CCGCTAACACGTCTCATCTATCATCCGTTGGATGATCCCCTGCTGCAGTATCAGGTCGAT 628946
Query 218923 GATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAA 218981
||||| || || |||||||| |||||| | || ||| ||| | | || || ||
Sbjct 628945 GATGG-TCAGCGCATTGAGCCAATTTGGTATATTCCCATTATACCGATGGTACTGGTGAA 628887
Query 218982 TGGTGCCAATGGTATCGGGACAGG 219005
||| ||| | || ||||| || ||
Sbjct 628886 TGGCGCCGAGGGCATCGGCACTGG 628863
>seq3383
Length=19223366
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
|| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 479874 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 479815
Query 142560 GAGCCCCACATCGGGC 142575
||||||||| | ||||
Sbjct 479814 GAGCCCCACGTTGGGC 479799
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 10824863 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 10824922
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 10824923 CCCCACGTTGGGC 10824935
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 12861026 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 12860967
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 12860966 CCCACGTTGGGC 12860955
>seq3191
Length=20611582
Score = 91.5 bits (100), Expect = 3e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 4746536 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4746477
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| ||||
Sbjct 4746476 CCCACGTTGGGCGAAAGT 4746459
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 4779402 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4779343
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 4779342 CCCCACGTTGGGC 4779330
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 4780063 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4780122
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 4780123 CCCCACGTTGGGC 4780135
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 5948861 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 5948802
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 5948801 CCCCACGTTGGGC 5948789
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3964941 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3964882
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3964881 CCCACGTTGGGC 3964870
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 4781439 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4781498
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 4781499 CCCACGTTGGGC 4781510
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 4798340 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4798399
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 4798400 CCCACGTTGGGC 4798411
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 12904338 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 12904397
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 12904398 CCCCGCAAGGGA 12904409
>seq3134
Length=2474545
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1628869 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1628928
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 1628929 CCCACGTTGGGC 1628940
>seq3289
Length=20206255
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116
|| ||||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 12645488 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 12645429
Query 142117 CCAG 142120
| ||
Sbjct 12645428 CAAG 12645425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027658621278730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |