Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq3603 102 7e-17
seq3378 102 7e-17
seq3289 95.1 1e-14
seq359 91.5 1e-13
>seq3603
Length=2672878
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211
|||||| ||||| || | || || || || | || || || |||||||||||||| ||
Sbjct 316361 AATACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTC 316302
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
| || || ||| || || || || || || |||| |||||||| || || ||
Sbjct 316301 CGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 316242
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
||||| ||||||||||| || || || | | || | |||||| | || ||
Sbjct 316241 TGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTC 316182
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| |||| ||| | || |||||||| || ||||| ||||| || |||||
Sbjct 316181 GACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131
>seq3378
Length=5191987
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||||||||| || | || ||| || || | || || || || ||||||||||| |||
Sbjct 4218049 ACCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 4217990
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| |||||| ||| || || || || || ||| |||| | |||||| || || || ||
Sbjct 4217989 CAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4217930
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| || || ||||| ||||| || | | |||| ||| |||| | || ||
Sbjct 4217929 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217870
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|||| ||| | || ||||| |||| || || || || |||||||||
Sbjct 4217869 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821
>seq3289
Length=20206255
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | | || ||||| | ||||| ||||| || || ||||| ||
Sbjct 14369568 CCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAA 14369627
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| || ||| |||||| | || || |||||| | || | |||||| || || ||||||
Sbjct 14369628 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGA 14369687
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| ||||||||||| ||||| ||| | | || | ||| || | | ||||||
Sbjct 14369688 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACC 14369747
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || |||||||||||||| |||||
Sbjct 14369748 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
>seq359
Length=456481
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || ||||| || || |||||||||||
Sbjct 66577 ATACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCT 66518
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||| ||||| || || || |||| |||||||| ||||| |||
Sbjct 66517 GACAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGA 66458
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| |||||| || | | |||| ||| || | | ||
Sbjct 66457 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCC 66398
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || ||||| || || || || ||||||||
Sbjct 66397 ACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || || || || || || ||||| ||
Sbjct 66805 ATACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCA 66746
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| ||| |||||| ||||| || || || |||| |||||||| ||||| |||
Sbjct 66745 GAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGA 66686
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | || | || |||| | ||
Sbjct 66685 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCC 66626
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || ||||| || || || || ||||||||
Sbjct 66625 ACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420065121150360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |