Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3603 102 7e-17 seq3378 102 7e-17 seq3289 95.1 1e-14 seq359 91.5 1e-13 >seq3603 Length=2672878 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||| ||||| || | || || || || | || || || |||||||||||||| || Sbjct 316361 AATACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTC 316302 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | || || ||| || || || || || || |||| |||||||| || || || Sbjct 316301 CGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 316242 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| || || || | | || | |||||| | || || Sbjct 316241 TGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTC 316182 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| ||| | || |||||||| || ||||| ||||| || ||||| Sbjct 316181 GACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq3378 Length=5191987 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | || ||| || || | || || || || ||||||||||| ||| Sbjct 4218049 ACCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 4217990 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||| || || || || || ||| |||| | |||||| || || || || Sbjct 4217989 CAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4217930 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || || ||||| ||||| || | | |||| ||| |||| | || || Sbjct 4217929 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217870 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| ||| | || ||||| |||| || || || || ||||||||| Sbjct 4217869 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821 >seq3289 Length=20206255 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | || ||||| | ||||| ||||| || || ||||| || Sbjct 14369568 CCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAA 14369627 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| |||||| | || || |||||| | || | |||||| || || |||||| Sbjct 14369628 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGA 14369687 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||||||||| ||||| ||| | | || | ||| || | | |||||| Sbjct 14369688 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACC 14369747 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||||||||| ||||| Sbjct 14369748 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq359 Length=456481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || ||||| || || ||||||||||| Sbjct 66577 ATACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCT 66518 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || || || |||| |||||||| ||||| ||| Sbjct 66517 GACAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGA 66458 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | |||| ||| || | | || Sbjct 66457 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCC 66398 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| || || || || |||||||| Sbjct 66397 ACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || || || ||||| || Sbjct 66805 ATACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCA 66746 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| |||||| ||||| || || || |||| |||||||| ||||| ||| Sbjct 66745 GAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGA 66686 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | || |||| | || Sbjct 66685 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCC 66626 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| || || || || |||||||| Sbjct 66625 ACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420065121150360