Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3134 176 9e-39 >seq3134 Length=2474545 Score = 176 bits (194), Expect = 9e-39 Identities = 471/710 (66%), Gaps = 15/710 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||| || |||||||| || ||||| || || ||||| |||| | | || | Sbjct 573471 CTGGCCTTTTTTGCCGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGC 573530 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 | || || ||| ||| ||||| || |||||||| ||||| ||||||||||| |||| Sbjct 573531 CAGGAAGTTCAGATTACA--GAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGA 573588 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGAG 42599 | || ||||| || ||||| | ||| | |||| || || | ||||| | || || Sbjct 573589 ATGTCCACTCGGAAATGTACAGCGTCCTGATTGACACATATATACGCGATCCGCATC-AG 573647 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGACTG 42658 ||| | || || || || || || || ||| || ||| | ||| |||||| ||||| Sbjct 573648 CGTGATTATCTATTTAATGCAATTGAAACAATG-CCGGCAGTTAAGCGGAAGGCCGACTG 573706 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 |||||| ||||| | | || | || || ||| | | | || ||| | Sbjct 573707 GGCGCTTTCTTGGATATCCTCTAAGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGC 573766 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 || || |||||||||||||| ||| ||| || || ||||| ||||| ||| || Sbjct 573767 TGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAG-- 573824 Query 42779 GGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 ||| | |||||||| ||||| |||||||||||||| ||| | | |||||||| ||| Sbjct 573825 CGTGGCCTTATGCCCGGCCTCACTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTG 573884 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 ||| | |||||||| ||| ||||| | || | ||| |||| | ||| Sbjct 573885 CATTGCGACTTTGCTGTCCTGATGTTCCAG---CATTTGGTGCAGCGTCCCTGCAGAGAG 573941 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | |||||| | || || || || || ||||||| || || | | Sbjct 573942 CGCATCATTGAGATCATCTCCGATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCA 574001 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 ||||| || || |||||||||| || || |||| | | || || ||| || Sbjct 574002 CTGCCGGTCAATTTGATCGGCATGAATTGCGCACTTATGTCCGAATATATTGAGTTTGTG 574061 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 ||||| | ||| ||| | | || || || || |||||||| | || || Sbjct 574062 GCCGATCGTCTGCTGGTTGAACTTGGGGTCGGCAAACTGTACAACACAAAGAATCCGTTT 574121 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 || ||||| | || |||||||| ||||| ||||| || || ||||| Sbjct 574122 ACATTCATGGAAATGATTTCGTTGGACGGCAAAACCAATTTCTTTGAGAA 574171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944179488632800