Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq359 131 4e-25
seq3378 120 7e-22
seq3289 116 9e-21
seq3603 89.7 1e-12
>seq359
Length=456481
Score = 131 bits (144), Expect = 4e-25
Identities = 154/206 (75%), Gaps = 7/206 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | ||| ||||| || ||||| | ||| || || ||||||
Sbjct 66082 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAG 66023
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| |||||||| || || || ||||| || || ||||||
Sbjct 66022 ATCAGACGCTGCTG---GTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACG 65966
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || || ||||| ||||| || |||| ||| ||
Sbjct 65965 TTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTT 65906
Query 288460 ACGAATATCTGCATTATG-TTATTCT 288484
||||| ||||||||| || | |||||
Sbjct 65905 ACGAAGATCTGCATTTTGATAATTCT 65880
Score = 125 bits (138), Expect = 2e-23
Identities = 145/194 (75%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| ||||| | ||| ||||| || ||||| | ||| || || ||||||
Sbjct 66310 TCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAG 66251
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| |||||||| || || || ||||| || || || |||
Sbjct 66250 ATCAGACGCTGCTG---GTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACG 66194
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || || || || ||||| || ||||| |||||
Sbjct 66193 TTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTC 66134
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 66133 ACGAAGATCTGCAT 66120
Score = 123 bits (136), Expect = 6e-23
Identities = 145/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || || || | | ||||||||| ||||| | ||| || || || ||
Sbjct 66539 TTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAA 66480
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||||||||||| || ||| |||||||| || || ||||| || || || |||||
Sbjct 66479 GATCAGACGCTGCTG---GTCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC 66423
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||| || || | ||| || | || || || || || || ||||| || ||||| |||||
Sbjct 66422 GTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTT 66363
Query 288459 GACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 66362 CACGAAGATCTGCAT 66348
Score = 113 bits (124), Expect = 1e-19
Identities = 142/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| ||||| | ||| ||||| || ||||| | ||| || || || |||
Sbjct 66766 TCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAG 66707
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| || || || || || || ||||| || || || |||
Sbjct 66706 ATCAGACGCTGCTG---GTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACG 66650
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || || || || ||||| || ||||| |||||
Sbjct 66649 TTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTC 66590
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 66589 ACGAAGATCTGCAT 66576
>seq3378
Length=5191987
Score = 120 bits (132), Expect = 7e-22
Identities = 169/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || ||||||| || || || ||||| || ||||
Sbjct 4217140 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 4217082
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| | |||||||| || || || || || || |||||||||| |||||| ||| |
Sbjct 4217081 CGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGA---T 4217025
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || || || || |||||||| || || || || || || || | |||| |
Sbjct 4217024 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 4216965
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||| ||||| || |||| ||||||||||| ||||||||
Sbjct 4216964 GCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910
Score = 120 bits (132), Expect = 7e-22
Identities = 169/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || ||||||| || || || ||||| || ||||
Sbjct 4217368 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 4217310
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| | |||||||| || || || || || || |||||||||| |||||| ||| |
Sbjct 4217309 CGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGA---T 4217253
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || || || || |||||||| || || || || || || || | |||| |
Sbjct 4217252 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 4217193
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||| ||||| || |||| ||||||||||| ||||||||
Sbjct 4217192 GCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138
Score = 120 bits (132), Expect = 7e-22
Identities = 169/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || ||||||| || || || ||||| || ||||
Sbjct 4217824 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 4217766
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| | |||||||| || || || || || || |||||||||| |||||| ||| |
Sbjct 4217765 CGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGA---T 4217709
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || || || || |||||||| || || || || || || || | |||| |
Sbjct 4217708 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 4217649
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||| ||||| || |||| ||||||||||| ||||||||
Sbjct 4217648 GCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594
Score = 107 bits (118), Expect = 5e-18
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| | || ||||| || || | || ||||| ||||||
Sbjct 4216872 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAG 4216813
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| ||| |||||| || || || || |||||||| || || || ||
Sbjct 4216812 ATCAAACGCTGCTGA---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACA 4216756
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || | ||||| ||||| || |||| ||||||
Sbjct 4216755 TTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 4216696
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 4216695 ACGAAGATCTGCAT 4216682
Score = 104 bits (114), Expect = 6e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| | || ||||| || || | || || || ||||||
Sbjct 4217556 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 4217497
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| ||| |||||| || || || || |||||||| || || || ||
Sbjct 4217496 ATCAAACGCTGCTGA---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACA 4217440
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || | ||||| ||||| || |||| ||||||
Sbjct 4217439 TTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 4217380
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 4217379 ACGAAGATCTGCAT 4217366
Score = 98.7 bits (108), Expect = 2e-15
Identities = 139/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| | || ||||| || || | || || || ||||||
Sbjct 4218012 TCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 4217953
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| ||| |||||| || || || || |||||||| || || || ||
Sbjct 4217952 ATCAAACGCTGCTGA---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACA 4217896
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || | ||||| ||||| || |||| ||||||
Sbjct 4217895 TTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 4217836
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 4217835 ACGAAGATCTGCAT 4217822
>seq3289
Length=20206255
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||||| ||||| | || ||||| || ||||| || || || || |||||
Sbjct 14369604 TCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAA 14369663
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| | |||||| ||| ||||| ||||||||||| |||||||| || ||||| ||
Sbjct 14369664 ATTAAACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACA 14369720
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| || ||| || || || ||||| ||||| || || || || ||
Sbjct 14369721 TTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTT 14369780
Query 288460 ACGAATATCTGCAT 288473
|| || || |||||
Sbjct 14369781 ACAAAAATTTGCAT 14369794
>seq3603
Length=2672878
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| || || ||||| | || ||||| || || || | || || || || |||
Sbjct 316321 TCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 316262
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| ||| ||| || |||||||| || |||||||| || || || ||
Sbjct 316261 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTC 316202
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || | || || || | ||||| ||||| ||||| || || || ||
Sbjct 316201 TCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACA 316142
Query 288463 AATATCTGCATT 288474
|| || ||||||
Sbjct 316141 AAGATTTGCATT 316130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179449903223340
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