Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq359 131 4e-25 seq3378 120 7e-22 seq3289 116 9e-21 seq3603 89.7 1e-12 >seq359 Length=456481 Score = 131 bits (144), Expect = 4e-25 Identities = 154/206 (75%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || ||||| | ||| || || |||||| Sbjct 66082 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAG 66023 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| |||||||| || || || ||||| || || |||||| Sbjct 66022 ATCAGACGCTGCTG---GTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACG 65966 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || || ||||| ||||| || |||| ||| || Sbjct 65965 TTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTT 65906 Query 288460 ACGAATATCTGCATTATG-TTATTCT 288484 ||||| ||||||||| || | ||||| Sbjct 65905 ACGAAGATCTGCATTTTGATAATTCT 65880 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | ||| ||||| || ||||| | ||| || || |||||| Sbjct 66310 TCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAG 66251 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| |||||||| || || || ||||| || || || ||| Sbjct 66250 ATCAGACGCTGCTG---GTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACG 66194 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || || || || ||||| || ||||| ||||| Sbjct 66193 TTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTC 66134 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 66133 ACGAAGATCTGCAT 66120 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | | ||||||||| ||||| | ||| || || || || Sbjct 66539 TTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAA 66480 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || ||| |||||||| || || ||||| || || || ||||| Sbjct 66479 GATCAGACGCTGCTG---GTCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC 66423 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| || | || || || || || || ||||| || ||||| ||||| Sbjct 66422 GTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTT 66363 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 66362 CACGAAGATCTGCAT 66348 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | ||| ||||| || ||||| | ||| || || || ||| Sbjct 66766 TCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAG 66707 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| || || || || || || ||||| || || || ||| Sbjct 66706 ATCAGACGCTGCTG---GTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACG 66650 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || || || || ||||| || ||||| ||||| Sbjct 66649 TTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTC 66590 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 66589 ACGAAGATCTGCAT 66576 >seq3378 Length=5191987 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| || || || ||||| || |||| Sbjct 4217140 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 4217082 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||| || || || || || || |||||||||| |||||| ||| | Sbjct 4217081 CGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGA---T 4217025 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || |||||||| || || || || || || || | |||| | Sbjct 4217024 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 4216965 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 4216964 GCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| || || || ||||| || |||| Sbjct 4217368 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 4217310 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||| || || || || || || |||||||||| |||||| ||| | Sbjct 4217309 CGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGA---T 4217253 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || |||||||| || || || || || || || | |||| | Sbjct 4217252 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 4217193 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 4217192 GCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| || || || ||||| || |||| Sbjct 4217824 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 4217766 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||| || || || || || || |||||||||| |||||| ||| | Sbjct 4217765 CGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGA---T 4217709 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || |||||||| || || || || || || || | |||| | Sbjct 4217708 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 4217649 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 4217648 GCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || ||||| || || | || ||||| |||||| Sbjct 4216872 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAG 4216813 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || || || || |||||||| || || || || Sbjct 4216812 ATCAAACGCTGCTGA---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACA 4216756 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| |||||| Sbjct 4216755 TTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 4216696 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4216695 ACGAAGATCTGCAT 4216682 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || ||||| || || | || || || |||||| Sbjct 4217556 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 4217497 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || || || || |||||||| || || || || Sbjct 4217496 ATCAAACGCTGCTGA---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACA 4217440 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| |||||| Sbjct 4217439 TTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 4217380 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4217379 ACGAAGATCTGCAT 4217366 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| | || ||||| || || | || || || |||||| Sbjct 4218012 TCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 4217953 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || || || || |||||||| || || || || Sbjct 4217952 ATCAAACGCTGCTGA---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACA 4217896 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| |||||| Sbjct 4217895 TTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 4217836 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4217835 ACGAAGATCTGCAT 4217822 >seq3289 Length=20206255 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || ||||| || ||||| || || || || ||||| Sbjct 14369604 TCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAA 14369663 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | |||||| ||| ||||| ||||||||||| |||||||| || ||||| || Sbjct 14369664 ATTAAACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACA 14369720 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || ||| || || || ||||| ||||| || || || || || Sbjct 14369721 TTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTT 14369780 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 14369781 ACAAAAATTTGCAT 14369794 >seq3603 Length=2672878 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | || ||||| || || || | || || || || ||| Sbjct 316321 TCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 316262 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| ||| || |||||||| || |||||||| || || || || Sbjct 316261 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTC 316202 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || | ||||| ||||| ||||| || || || || Sbjct 316201 TCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACA 316142 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 316141 AAGATTTGCATT 316130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179449903223340