Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3023 132 6e-26 >seq3023 Length=5802038 Score = 132 bits (146), Expect = 6e-26 Identities = 292/427 (68%), Gaps = 12/427 (3%) Strand=Plus/Plus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| ||||| || || |||| ||| ||||| || ||||| || | | || ||||| Sbjct 628861 AACCAGTGCCGATGCCCTCGGCGCCATTCACCAGTACCATCGGTATAATGGGAATATACC 628920 Query 171786 AGTCTGGTTCAATCGCAC-GCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTC 171844 | ||| ||||| || | | |||||||| || ||| | |||| ||| || ||| | Sbjct 628921 AAATTGGCTCAAT-GCGCTGACCATCATCGACCTGATACTGCAGCAGGGGATCATCCAAC 628979 Query 171845 GGATCAAAGATTTTACGAGCATCCTTGGTGAGTTT--TGTGAAGATGTACCT--CGTTTG 171900 |||| | |||| ||| | | || || | |||||| || || | || | | Sbjct 628980 GGATGATAGATGAGACGTGTTAGC--GGCGACATCAATGTGAAAATATAACGAGCGCTCG 629037 Query 171901 AGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATT 171960 || ||| |||||||| ||||||| || || || ||||| | ||| || | | ||| Sbjct 629038 C-ACA-ATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATT 629095 Query 171961 GATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGA 172019 |||||||||||| |||| | | | ||||| || ||||| || ||| || ||||| | Sbjct 629096 GATATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACA 629154 Query 172020 CTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCA 172079 || |||||||| ||||| ||| | || || || | ||| ||| || ||||| |||| Sbjct 629155 TCTCGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCA 629214 Query 172080 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 172139 |||| ||| ||| | |||||||| | |||||||||| | ||| ||||| | Sbjct 629215 CCTCACGCTTATCGTTACGCTTGAAGCACGTAAACATGACCTTGCGCTGACCGGGCTTAA 629274 Query 172140 GGCCGTC 172146 |||| || Sbjct 629275 GGCCATC 629281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597252572572400