Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq466 167 2e-36
seq3603 141 9e-29
seq359 132 5e-26
seq3289 118 1e-21
seq3378 91.5 1e-13
>seq466
Length=100518
Score = 167 bits (184), Expect = 2e-36
Identities = 539/834 (65%), Gaps = 6/834 (1%)
Strand=Plus/Minus
Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730
|||||| || |||||| || |||| || || ||||| || || | ||||||||||||
Sbjct 43093 TTTGTCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCC 43034
Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790
||||| | || |||||| | | | ||| | |||||| | | | ||
Sbjct 43033 TGTTTTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGG 42974
Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850
|| || | | | ||||| || || || ||||| || || || || | ||| || ||
Sbjct 42973 CTCAGCAACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGC 42914
Query 153851 CATGTCAATCAAGTT---TTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907
||| | ||| |||| ||||| | | || ||||| || |||||||| | | ||
Sbjct 42913 CATTTTAAT--AGTTGACTTTACCGAT-ATCTCCCATACGGTTTTGTACAAATCCCGGAT 42857
Query 153908 GTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCG 153967
|| |||||||| || || || || | | |||| | || ||||| |||
Sbjct 42856 TTCTTCGGGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTT 42797
Query 153968 CATGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTAC 154027
||| | || || |||||| || |||||| | || || | || | ||
Sbjct 42796 CATCTCATCATCCCACAAATCAAGCTCCGTTAAATCACGCAATAAATGAGGATTTACAAC 42737
Query 154028 TTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGA 154087
|||||| || |||| |||||| || | ||| | || ||| | |||||||||||
Sbjct 42736 TTGAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGA 42677
Query 154088 TTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGA 154147
|| |||||||| | |||||| || || | |||||||||||| || | | ||||||
Sbjct 42676 CTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGA 42617
Query 154148 GTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGT 154207
||||| | |||||| | | ||| | ||| | || |||| | ||| | | ||
Sbjct 42616 GTTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTGT 42557
Query 154208 AGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATA 154267
||| ||||||||| || || || ||||| ||| || | ||||| || ||||
Sbjct 42556 TGGTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATATA 42497
Query 154268 ACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTA 154327
| ||||| || | | || | ||| || ||||| ||||| || || |||||||
Sbjct 42496 GGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAGTA 42437
Query 154328 TACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCC 154387
| ||||| ||||||| || || | |||| || ||||| ||||| || |
Sbjct 42436 AATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAACCT 42377
Query 154388 CAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAA 154447
|| | | || ||||| || | |||||| | || | |||| || | ||| |||
Sbjct 42376 CATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGTAA 42317
Query 154448 ATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501
||| |||| ||| || | || |||||||| || ||||| || ||||||||
Sbjct 42316 ATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATT 42263
Score = 104 bits (114), Expect = 2e-17
Identities = 517/809 (64%), Gaps = 27/809 (3%)
Strand=Plus/Minus
Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691
|||||||| | ||| ||||||||||| || || || | |||| ||||| |||
Sbjct 42129 ACAATTTCCGTGCATAAATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTT 42070
Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751
|||| || | |||||| | | ||||| ||||| || || |||||||| | ||||||
Sbjct 42069 CTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATT 42010
Query 154752 ATTGTG--CGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCAT 154809
|| | | ||| ||| | | |||| ||| | | | ||| || | ||||
Sbjct 42009 ATGGCAAACCAAAGAGATT--GAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCAT 41952
Query 154810 ATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGT 154869
||| | |||| ||||||||| ||| || | || || || |||||| || ||
Sbjct 41951 ATTTGACATACAATTTTTCAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGT 41892
Query 154870 CGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCA 154929
||||||||||| ||||| ||||| || || || |||||||| | ||| || |
Sbjct 41891 GTGGACACATCAACGACCAATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAA 41832
Query 154930 CCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTA 154989
|||||| || || || | ||| || ||| | || || || | ||| ||||
Sbjct 41831 TCCACAAGGCATAAAATAGATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTT-TTTTTA 41773
Query 154990 AATTC-AAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCT 155048
| || ||||| ||| | | ||| | ||||| ||||| | || | || | || |||
Sbjct 41772 AGGTCTAAAAATTCAAACACGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCT 41713
Query 155049 TTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAAT 155105
| ||| || || ||||| || | || | ||| || | || | | || |
Sbjct 41712 GGTCTTTTACCACCACCCTGATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATT 41653
Query 155106 GGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCT 155165
||| ||| ||| | | || || || ||||| || | | |||| || ||
Sbjct 41652 GGTACCAAGCCATTTGAAGTACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATA 41593
Query 155166 TTATGAACATTAACGCCCAAACCTCC-GCCGTATTT--AGATATTTGCGCACAGTCCGCC 155222
||||||||||| || | ||||| |||| |||| |||| |||||||| | | |
Sbjct 41592 CAATGAACATTAAGACCAATGCCTCCTGCCG-ATTTGGAGATCATTGCGCAC--TGCTCT 41536
Query 155223 AAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGAT 155282
| |||| | ||||||| || || | || || || | ||||| || |||
Sbjct 41535 ACTGTTTTAAATATTCCTTCAATAGAATCCGATGCCATTGTTAAAAGAAAACATGATGAT 41476
Query 155283 AATTG----AGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACAT 155338
||||| |||| |||| || ||||| | || || || |||||||| ||
Sbjct 41475 AATTGGGGACGGTTTGTGGCA----GCAGCAAAAAGCGTTGGTGATGCATGTGTAAA-AT 41421
Query 155339 TTTGTTGGCGGT--TAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATA 155396
||| || | ||| || || ||||| || || | ||||| ||| ||| ||||||
Sbjct 41420 AACGTT-CCGATAGTAAATTATATGTTTCAATCGCAGAATCAATATCATCACCATGTATA 41362
Query 155397 CCGATCGCCACGCGCATCAGCATGTGTTG 155425
|| || || || ||||| |||||||| ||
Sbjct 41361 CCAATTGCGACACGCATTAGCATGTGCTG 41333
>seq3603
Length=2672878
Score = 141 bits (156), Expect = 9e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| | || | ||||| || |||||||||||||| || |
Sbjct 316358 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGA 316299
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | || || ||||||||||||||| | || || |||||||| || || ||
Sbjct 316298 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 316239
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| |||||||| ||||| ||||| ||| ||| ||| | || ||| || || ||
Sbjct 316238 AATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 316179
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | || | |||||||||||| | ||||| || || |||||||||||
Sbjct 316178 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 316128
>seq359
Length=456481
Score = 132 bits (146), Expect = 5e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || |||||||| || | || ||||| | ||||| || |||||||||
Sbjct 66088 GTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCG 66029
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || || ||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct 66028 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 65969
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| ||| | ||||| | ||||| || | || | |||||| || |||||||||
Sbjct 65968 ACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTT 65909
Query 64427 TTTACGAAAATTTGCATTTTAATAAT 64452
|||||||| || |||||||| |||||
Sbjct 65908 TTTACGAAGATCTGCATTTTGATAAT 65883
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | |||||| | || | |||||||| || || |||||||||||||
Sbjct 66575 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGA 66516
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | ||||| || |||||||||||| | || || ||||||||||| |||||
Sbjct 66515 CAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGG 66456
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || || || ||| || ||| | ||||||| | |||||
Sbjct 66455 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCAC 66396
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | |||||| || |||| || || ||||| || |||||
Sbjct 66395 CTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | |||||| | || | ||||| || || || || ||||| || |
Sbjct 66803 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 66744
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| | ||||| || |||||||||||| | || || ||||||||||| |||||
Sbjct 66743 GAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGG 66684
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| || ||| | ||||| | |||||
Sbjct 66683 AATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCAC 66624
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | |||||| || |||| || || ||||| || |||||
Sbjct 66623 CTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || || ||||| || | || ||||| | ||||| || |||||||||
Sbjct 66316 GTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCG 66257
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || || ||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct 66256 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTG 66197
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| ||| | ||||| | ||||| || | ||| | |||||| || |||| ||
Sbjct 66196 ACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTC 66137
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 66136 TTCACGAAGATCTGCAT 66120
>seq3289
Length=20206255
Score = 118 bits (130), Expect = 1e-21
Identities = 158/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | ||| | || || ||||| || || ||||| || | | |||||| | |||
Sbjct 14369583 AGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCT 14369642
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||||||| || |||| | |||||||| || ||||||||||||||||| ||
Sbjct 14369643 TCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 14369702
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408
|| | | || ||||| ||| ||| | |||| ||| || || || || | ||| | |
Sbjct 14369703 TGGA-TCTTGGCTTTAACATTCTCGATGGTAT--CCGACGGTTCGACCTCAAGAGTGATG 14369759
Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || || | |||||||| |||||||||||
Sbjct 14369760 GTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
>seq3378
Length=5191987
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| |||| | || || | || | || || || || ||||||||||| || |
Sbjct 4218049 ACCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 4217990
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || |||||||||||||| | || | |||||||| || || ||
Sbjct 4217989 CAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4217930
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| ||| ||| | ||||| | |||||
Sbjct 4217929 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217870
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| ||||| || || ||||| || |||||
Sbjct 4217869 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | | || || | || || ||||||||||||
Sbjct 4217562 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCG 4217503
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || | |||||||| || || ||||| || || || || || || || |||
Sbjct 4217502 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4217443
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | ||||| | ||||| || | || | ||||||||| ||||| ||
Sbjct 4217442 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4217383
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 4217382 TTGACGAAGATCTGCAT 4217366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499560297573200
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