Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq466 167 2e-36 seq3603 141 9e-29 seq359 132 5e-26 seq3289 118 1e-21 seq3378 91.5 1e-13 >seq466 Length=100518 Score = 167 bits (184), Expect = 2e-36 Identities = 539/834 (65%), Gaps = 6/834 (1%) Strand=Plus/Minus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 |||||| || |||||| || |||| || || ||||| || || | |||||||||||| Sbjct 43093 TTTGTCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCC 43034 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 ||||| | || |||||| | | | ||| | |||||| | | | || Sbjct 43033 TGTTTTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGG 42974 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 || || | | | ||||| || || || ||||| || || || || | ||| || || Sbjct 42973 CTCAGCAACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGC 42914 Query 153851 CATGTCAATCAAGTT---TTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907 ||| | ||| |||| ||||| | | || ||||| || |||||||| | | || Sbjct 42913 CATTTTAAT--AGTTGACTTTACCGAT-ATCTCCCATACGGTTTTGTACAAATCCCGGAT 42857 Query 153908 GTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCG 153967 || |||||||| || || || || | | |||| | || ||||| ||| Sbjct 42856 TTCTTCGGGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTT 42797 Query 153968 CATGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTAC 154027 ||| | || || |||||| || |||||| | || || | || | || Sbjct 42796 CATCTCATCATCCCACAAATCAAGCTCCGTTAAATCACGCAATAAATGAGGATTTACAAC 42737 Query 154028 TTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGA 154087 |||||| || |||| |||||| || | ||| | || ||| | ||||||||||| Sbjct 42736 TTGAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGA 42677 Query 154088 TTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGA 154147 || |||||||| | |||||| || || | |||||||||||| || | | |||||| Sbjct 42676 CTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGA 42617 Query 154148 GTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGT 154207 ||||| | |||||| | | ||| | ||| | || |||| | ||| | | || Sbjct 42616 GTTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTGT 42557 Query 154208 AGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATA 154267 ||| ||||||||| || || || ||||| ||| || | ||||| || |||| Sbjct 42556 TGGTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATATA 42497 Query 154268 ACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTA 154327 | ||||| || | | || | ||| || ||||| ||||| || || ||||||| Sbjct 42496 GGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAGTA 42437 Query 154328 TACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCC 154387 | ||||| ||||||| || || | |||| || ||||| ||||| || | Sbjct 42436 AATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAACCT 42377 Query 154388 CAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAA 154447 || | | || ||||| || | |||||| | || | |||| || | ||| ||| Sbjct 42376 CATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGTAA 42317 Query 154448 ATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501 ||| |||| ||| || | || |||||||| || ||||| || |||||||| Sbjct 42316 ATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATT 42263 Score = 104 bits (114), Expect = 2e-17 Identities = 517/809 (64%), Gaps = 27/809 (3%) Strand=Plus/Minus Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 |||||||| | ||| ||||||||||| || || || | |||| ||||| ||| Sbjct 42129 ACAATTTCCGTGCATAAATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTT 42070 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751 |||| || | |||||| | | ||||| ||||| || || |||||||| | |||||| Sbjct 42069 CTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATT 42010 Query 154752 ATTGTG--CGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCAT 154809 || | | ||| ||| | | |||| ||| | | | ||| || | |||| Sbjct 42009 ATGGCAAACCAAAGAGATT--GAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCAT 41952 Query 154810 ATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGT 154869 ||| | |||| ||||||||| ||| || | || || || |||||| || || Sbjct 41951 ATTTGACATACAATTTTTCAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGT 41892 Query 154870 CGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCA 154929 ||||||||||| ||||| ||||| || || || |||||||| | ||| || | Sbjct 41891 GTGGACACATCAACGACCAATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAA 41832 Query 154930 CCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTA 154989 |||||| || || || | ||| || ||| | || || || | ||| |||| Sbjct 41831 TCCACAAGGCATAAAATAGATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTT-TTTTTA 41773 Query 154990 AATTC-AAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCT 155048 | || ||||| ||| | | ||| | ||||| ||||| | || | || | || ||| Sbjct 41772 AGGTCTAAAAATTCAAACACGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCT 41713 Query 155049 TTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAAT 155105 | ||| || || ||||| || | || | ||| || | || | | || | Sbjct 41712 GGTCTTTTACCACCACCCTGATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATT 41653 Query 155106 GGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCT 155165 ||| ||| ||| | | || || || ||||| || | | |||| || || Sbjct 41652 GGTACCAAGCCATTTGAAGTACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATA 41593 Query 155166 TTATGAACATTAACGCCCAAACCTCC-GCCGTATTT--AGATATTTGCGCACAGTCCGCC 155222 ||||||||||| || | ||||| |||| |||| |||| |||||||| | | | Sbjct 41592 CAATGAACATTAAGACCAATGCCTCCTGCCG-ATTTGGAGATCATTGCGCAC--TGCTCT 41536 Query 155223 AAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGAT 155282 | |||| | ||||||| || || | || || || | ||||| || ||| Sbjct 41535 ACTGTTTTAAATATTCCTTCAATAGAATCCGATGCCATTGTTAAAAGAAAACATGATGAT 41476 Query 155283 AATTG----AGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACAT 155338 ||||| |||| |||| || ||||| | || || || |||||||| || Sbjct 41475 AATTGGGGACGGTTTGTGGCA----GCAGCAAAAAGCGTTGGTGATGCATGTGTAAA-AT 41421 Query 155339 TTTGTTGGCGGT--TAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATA 155396 ||| || | ||| || || ||||| || || | ||||| ||| ||| |||||| Sbjct 41420 AACGTT-CCGATAGTAAATTATATGTTTCAATCGCAGAATCAATATCATCACCATGTATA 41362 Query 155397 CCGATCGCCACGCGCATCAGCATGTGTTG 155425 || || || || ||||| |||||||| || Sbjct 41361 CCAATTGCGACACGCATTAGCATGTGCTG 41333 >seq3603 Length=2672878 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | ||||| || |||||||||||||| || | Sbjct 316358 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGA 316299 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || ||||||||||||||| | || || |||||||| || || || Sbjct 316298 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 316239 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| ||| ||| ||| | || ||| || || || Sbjct 316238 AATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 316179 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||| | ||||| || || ||||||||||| Sbjct 316178 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 316128 >seq359 Length=456481 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || ||||| | ||||| || ||||||||| Sbjct 66088 GTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCG 66029 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| ||||| ||||| || || ||||| || || ||| Sbjct 66028 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 65969 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| | ||||| || | || | |||||| || ||||||||| Sbjct 65968 ACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTT 65909 Query 64427 TTTACGAAAATTTGCATTTTAATAAT 64452 |||||||| || |||||||| ||||| Sbjct 65908 TTTACGAAGATCTGCATTTTGATAAT 65883 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||||| || || ||||||||||||| Sbjct 66575 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGA 66516 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| || |||||||||||| | || || ||||||||||| ||||| Sbjct 66515 CAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGG 66456 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | ||||||| | ||||| Sbjct 66455 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCAC 66396 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || |||| || || ||||| || ||||| Sbjct 66395 CTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | ||||| || || || || ||||| || | Sbjct 66803 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 66744 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | ||||| || |||||||||||| | || || ||||||||||| ||||| Sbjct 66743 GAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGG 66684 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| || ||| | ||||| | ||||| Sbjct 66683 AATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCAC 66624 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || |||| || || ||||| || ||||| Sbjct 66623 CTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || || ||||| || | || ||||| | ||||| || ||||||||| Sbjct 66316 GTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCG 66257 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| ||||| ||||| || || ||||| || || ||| Sbjct 66256 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTG 66197 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| | ||||| || | ||| | |||||| || |||| || Sbjct 66196 ACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTC 66137 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 66136 TTCACGAAGATCTGCAT 66120 >seq3289 Length=20206255 Score = 118 bits (130), Expect = 1e-21 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || ||||| || || ||||| || | | |||||| | ||| Sbjct 14369583 AGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCT 14369642 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||| || |||| | |||||||| || ||||||||||||||||| || Sbjct 14369643 TCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 14369702 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408 || | | || ||||| ||| ||| | |||| ||| || || || || | ||| | | Sbjct 14369703 TGGA-TCTTGGCTTTAACATTCTCGATGGTAT--CCGACGGTTCGACCTCAAGAGTGATG 14369759 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || | |||||||| ||||||||||| Sbjct 14369760 GTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq3378 Length=5191987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | || || | || | || || || || ||||||||||| || | Sbjct 4218049 ACCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 4217990 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || |||||||||||||| | || | |||||||| || || || Sbjct 4217989 CAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4217930 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| ||| | ||||| | ||||| Sbjct 4217929 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217870 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||||| || || ||||| || ||||| Sbjct 4217869 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | || || | || || |||||||||||| Sbjct 4217562 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCG 4217503 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || ||||| || || || || || || || ||| Sbjct 4217502 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4217443 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | ||||| || | || | ||||||||| ||||| || Sbjct 4217442 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4217383 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 4217382 TTGACGAAGATCTGCAT 4217366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499560297573200