Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq3169 89.7 4e-13
>seq3169
Length=10161210
Score = 89.7 bits (98), Expect = 4e-13
Identities = 182/268 (68%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
||||||||||| | ||||||| ||||| |||| || ||||||||||| || |||
Sbjct 3080670 CAGAACACCATGTATGATTGGGTGCGGGATCATCGGGTGCATCACAAGTACTCGGAGACG 3080611
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
||||| || || || ||||| | || |||| ||||||||||| || ||||| |||
Sbjct 3080610 GACGCCGATCCGCATAATGCCAATCGCGGCTTCTTCTTCTCGCACGTCGGCTGGCTGATG 3080551
Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626
||| ||| | || || || | ||| | || | |||| || |||| |||||
Sbjct 3080550 ATGCTGAAGCATCCGGATGTCCT-TCGCCGTGGCAGGCAAATCGATATGAGCGACATTGT 3080492
Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTG 108686
|||||||| || | | || || |||||| | | || || | |||||||
Sbjct 3080491 TTCCGATCCTGTTCTCCAATTCCATCAGAAATACTTTGTGCTGCTGAAGACGCTGCTCTG 3080432
Query 108687 TTTTGTTATACCGGTGTGGGTGCCGGTC 108714
||||| | || || ||||||||||
Sbjct 3080431 CTTTGTGCTGCCCACGTTGGTGCCGGTC 3080404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381709846858320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |