Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3169 89.7 4e-13 >seq3169 Length=10161210 Score = 89.7 bits (98), Expect = 4e-13 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||||| | ||||||| ||||| |||| || ||||||||||| || ||| Sbjct 3080670 CAGAACACCATGTATGATTGGGTGCGGGATCATCGGGTGCATCACAAGTACTCGGAGACG 3080611 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 ||||| || || || ||||| | || |||| ||||||||||| || ||||| ||| Sbjct 3080610 GACGCCGATCCGCATAATGCCAATCGCGGCTTCTTCTTCTCGCACGTCGGCTGGCTGATG 3080551 Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626 ||| ||| | || || || | ||| | || | |||| || |||| ||||| Sbjct 3080550 ATGCTGAAGCATCCGGATGTCCT-TCGCCGTGGCAGGCAAATCGATATGAGCGACATTGT 3080492 Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTG 108686 |||||||| || | | || || |||||| | | || || | ||||||| Sbjct 3080491 TTCCGATCCTGTTCTCCAATTCCATCAGAAATACTTTGTGCTGCTGAAGACGCTGCTCTG 3080432 Query 108687 TTTTGTTATACCGGTGTGGGTGCCGGTC 108714 ||||| | || || |||||||||| Sbjct 3080431 CTTTGTGCTGCCCACGTTGGTGCCGGTC 3080404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381709846858320