Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq466 136 4e-27
seq3134 127 2e-24
seq3378 109 5e-19
seq3603 104 2e-17
seq359 95.1 1e-14
>seq466
Length=100518
Score = 136 bits (150), Expect = 4e-27
Identities = 480/744 (65%), Gaps = 23/744 (3%)
Strand=Plus/Minus
Query 153030 TTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGT 153089
|| || ||||||||||| || | ||| |||||||| ||| | || |||| | ||
Sbjct 42744 TTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGC 42685
Query 153090 TCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACC 153149
|| || || || || ||||| | |||||| || |||| ||| || |||||| || |
Sbjct 42684 TCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATT 42625
Query 153150 AACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCC--TGCCAATCCC 153207
| |||||| || | | |||||| | ||| | |||| | | | ||| ||||
Sbjct 42624 AGCAAAGAGTTTCTAACACCGTGCTGTTTTATG--GACCTTTTAAGATGATCCCAGTCCC 42567
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267
| || | | |||| ||||||||| || |||||||| ||||| || | ||||
Sbjct 42566 AAAGATCTGTTGGTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGAC 42507
Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCG 153327
| || | | || || ||| || | || || ||| || ||||| || | |
Sbjct 42506 TTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAG 42447
Query 153328 CGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGT 153387
| |||||||| || ||||| |||||||| ||| | || | ||||||||||| || |
Sbjct 42446 CTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCAT 42387
Query 153388 ACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTC 153447
|||| | | || ||| | || || || || | || || | ||| | || || || |
Sbjct 42386 ACGGAAACCTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGC 42327
Query 153448 GATGC-----TTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGAT 153502
| ||| | | || | ||||| || | |||||| | || ||| ||
Sbjct 42326 GGTGCCGTAAATTTGATTTTTTTGCCTCTGGC-----AAGGGATAATAGTTTATATCAAT 42272
Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562
||||| || ||||| || | |||||||| | || ||||| | ||| || ||
Sbjct 42271 TATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTA 42212
Query 153563 GGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621
| ||||| | ||| || | || | ||| || || || | |||||| || |
Sbjct 42211 AGATTTTTCGGC----CGTCACAAACATGTTTAGGGCTATTGATGCTAAATTACATACAG 42156
Query 153622 CCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679
| | || || | ||||| |||| || || || | ||| | || ||||| |||||
Sbjct 42155 CTATTTCGTC--TGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTAT 42098
Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|| | |||||| ||||||||||| | || |||| |||||| || |||||||| ||
Sbjct 42097 AGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAAAAGCATGTAAGG 42038
Query 153740 TCCGCCGGTCTCGACTTGCGTTTC 153763
|| ||||| ||||| | |||
Sbjct 42037 GGTACCAGTCTCCACTTGAGATTC 42014
>seq3134
Length=2474545
Score = 127 bits (140), Expect = 2e-24
Identities = 308/455 (68%), Gaps = 15/455 (3%)
Strand=Plus/Plus
Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454
|||||||| | || || || || |||||| | || ||| |||||||||||| |
Sbjct 573747 GAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTTTGCTTCT 573806
Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514
||||||| | || | | ||| | ||||||||||| || ||| ||||| ||||
Sbjct 573807 ATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCCTCACTTTCTCGAACGAACTGATC 573866
Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG-AC 52573
|| |||||||| |||||||| |||||||| ||| | | || ||| |
Sbjct 573867 TCCCGCGACGAGGGACTGCATTGCGACTTTGCTGTCCTGATGTTCCAGCATTTGGTGCAG 573926
Query 52574 CGAAAAATTGGATTCGGACA-CG-ATCCT-GAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630
|| | | | || | || ||| | ||| || || || || || | || ||
Sbjct 573927 CG------TCCCTGCAGAGAGCGCATCATTGAG-ATCATCTCCGATGCTGTTACCATTGA 573979
Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCA 52689
| |||||||| |||| | ||| ||||||||| | || | |||||||| ||||| | |
Sbjct 573980 ACAGGAGTTTCTTACTGACGCACTGCCGGTCAATTTGATCGGCATGAATTGCGCACTT-A 574038
Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG-TGCAGCTCGGGCAGCCAAAG 52748
||| ||| || || ||||||||||| ||||||||| ||| || | | ||| | ||||
Sbjct 574039 TGTCCGAATATATTGAGTTTGTGGCCGATCGTCTGCTGGTTGAACTTGGGGTCGGCAAAC 574098
Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808
| | |||| | ||||||||| || ||| | | |||||| | || ||||| |||
Sbjct 574099 T-GTACAACACAAAGAATCCGTTTACATTCATGGAAATGATTTCGTTGGACGGCAAAACC 574157
Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCG 52843
|| || || ||||| ||| ||||| ||| ||||
Sbjct 574158 AATTTCTTTGAGAAAAAAGTGGGCGAATATCAGCG 574192
>seq3378
Length=5191987
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| ||||| ||| || || | | |||||||| ||||||||||||||| |
Sbjct 4218048 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4217989
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||| || || || |||| |||| | |||||| || || || ||
Sbjct 4217988 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217929
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || ||||| ||| || || | | || | ||| |||| | |||||||
Sbjct 4217928 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 4217869
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | || | || || ||||||| || || || || |||||||||
Sbjct 4217868 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | || || || | | |||||||| || ||||||||||||
Sbjct 4217593 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4217534
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| |||||| ||||| || || || |||| |||| | |||||| || || || ||
Sbjct 4217533 CAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4217474
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | | || | ||| |||| | ||||||
Sbjct 4217473 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217414
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || || ||||||| || || || || |||||||||
Sbjct 4217413 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | || || || | | |||||||| || ||||||||||||
Sbjct 4216909 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4216850
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| |||||| ||||| || || || |||| |||| | |||||| || || || ||
Sbjct 4216849 CAAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4216790
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | | || | ||| |||| | ||||||
Sbjct 4216789 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4216730
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || ||||||| || || || || ||||||||
Sbjct 4216729 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | ||| | ||| | | | |||||||| || ||||||||||||
Sbjct 4217365 GCCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4217306
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||||| | || || || | |||| | |||||| || || || ||
Sbjct 4217305 CAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 4217246
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | | || | ||| |||| | ||||||
Sbjct 4217245 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217186
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || || ||||||| || || || || |||||||||
Sbjct 4217185 CTCCAAGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217137
>seq3603
Length=2672878
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| || || || | | |||||||||||||||||||||||
Sbjct 316357 CCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAA 316298
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || || |||| | |||| |||||||| || || || ||
Sbjct 316297 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGA 316238
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||||||||| |||||| || | | || | |||||| | | ||| |||
Sbjct 316237 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 316178
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || || ||||| ||||| || |||||
Sbjct 316177 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131
>seq359
Length=456481
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | || || || | | | |||||||| || |||||||||||
Sbjct 66118 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 66059
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || || || ||||| || |||| |||| |||||||| ||||| |||||
Sbjct 66058 AGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 65999
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | || |||| | |||||||
Sbjct 65998 ATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACC 65939
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || |||| ||||||||| || ||||||||
Sbjct 65938 TCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 65892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496178469621600
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