Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq466 223 3e-53 seq3289 95.1 1e-14 >seq466 Length=100518 Score = 223 bits (246), Expect = 3e-53 Identities = 718/1100 (65%), Gaps = 31/1100 (3%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || || ||| | ||||| || || || || || |||||||| | |||||| | || ||| Sbjct 42008 ATAATTGAATCTCAAGTGGAGACTGGTACCCCTTACATGCTTTTTAAAGACTCGTGTAAC 42067 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 || |||| |||||| || | ||||| ||||| || |||||| | ||| | |||||| Sbjct 42068 AGAAAAAGCAATCAACAAAATGTTGGAACTATAAAGTGCAGTAATTTATGCACGGAAATT 42127 Query 123708 ATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA 123765 | || || ||||| | || || | || || |||||||| || || || | | | Sbjct 42128 GTTGAGTATTCAGCGC--CAGACGAAATAGCTGTATGTAATTTAGCATCAATAGCCCTAA 42185 Query 123766 A-----TCGTTGCGTC-GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAA 123819 | | || || | ||||| ||| | ||| ||| || ||| |||| | Sbjct 42186 ACATGTTTGTGACGGCCGAAAAAT---CTTACGACTTCAAAAAACTGAAAGATGTAACTA 42242 Query 123820 AAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAG 123879 ||| ||| || || |||| ||||| || ||| | || | |||||| ||| || | Sbjct 42243 AAATTGTTACCAAAAACCTGAATAAAATAATTGATATAAACTATTATCCCTTGCCAGAGG 42302 Query 123880 CGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACG 123939 | || ||||| ||| | || | || | || | |||||||| || || | Sbjct 42303 CAAAAAAATCAAATTTACGGCACCGCCCTATTGGTATTGGTGTACAAGGGTTTGCAGATG 42362 Query 123940 CGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAA 123999 | || | || || | | ||||| |||||||| |||||| | | ||| |||| Sbjct 42363 CATTAATTCTGATGAGGTTTCCGTATGAAAGCGAAGAAGCATCTCTTTTGAATCAACAAA 42422 Query 124000 TAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACG 124059 | ||||| ||||| || || |||||||| || || || ||| | | || | | | Sbjct 42423 TCTTTGAAACTATTTACTATGGAGCTTTGGAAGCTAGTTGTGAATTGTCCAAGAAGGATG 42482 Query 124060 GCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGT 124119 || |||| |||| || || || || | ||| || |||| ||||| || |||| Sbjct 42483 GCCCGTATGAAACCTATATTGGAAGTCCAGTAAGCAAGGGAGTTTTACAGTATGATATGT 42542 Query 124120 GGAATGCTACACCGACAAATTTGTGGGACTGG-AGCGTTTTAAAACAACGCATATCGACG 124178 |||| |||| ||| || | ||||||||| | | | |||||| | |||| | Sbjct 42543 GGAACAGATCACCAACAGATCTTTGGGACTGGGATCATCTTAAAAGGTC-CATAAAACAG 42601 Query 124179 CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATT 124238 |||||| | | ||||| || | | || |||||| || ||| ||||||| ||||| Sbjct 42602 CACGGTGTTAGAAACTCTTTGCTAATTGCTCCCATGCCCACAGCATCCACTGCGCAAATA 42661 Query 124239 TTAGGAAACAACGAATCCTTCGAGCCGTTCACT--AACAATTTGTACGTGCGACGAGTGT 124296 | || ||||| || || |||||||| | |||| || |||| ||| | |||||| | Sbjct 42662 ATGGGCAACAATGAGTCGTTCGAGCCCTACACTTCAAACATTTATACAAG--ACGAGTAT 42719 Query 124297 TAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATT 124356 | |||| || |||||||| |||||| |||||| || || || || | | ||| Sbjct 42720 TGTCCGGTGAGTTTCAAGTTGTAAATCCTCATTTATTGCGTGATTTAACGGAGCTTGATT 42779 Query 124357 TGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCG 124416 ||| ||||| | ||| || ||||||| || | | || | || || | Sbjct 42780 TGTGGGATGATGAGATGAAAAATCAAATTATCGCAAGCCGAGGATCTATACAAAATATAG 42839 Query 124417 CTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAAT 124472 || || || ||| | || | | ||||||||||||| ||||| || | ||| | Sbjct 42840 AATCTATACCCGAAGAAATCCGGGATTTGTACAAAACCGTATGGGAGATATCGGTAAAGT 42899 Query 124473 AAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTT 124532 ||| ||||| |||||| | || |||| |||| | |||||||||||||||||| Sbjct 42900 CAACTATTAA----AATGGCAGCTGATAGAGGGGCGTTTATTGATCAAAGTCAATCTTTT 42955 Query 124533 AACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGC-ATACACATGCACGCGTG 124591 || | ||| || || || | ||| | || | || | || ||| | | | || Sbjct 42956 AATATTCATGTTGCTGAGCCAAACTATG-GAAAATTAACATCAATCCACTTTTATTCCTG 43014 Query 124592 GAGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCA 124650 || ||| || || ||||| ||||||||||| | | || ||||| || || |||| | Sbjct 43015 GA-AAGCGGGCCTTAAAACAGGCATGTATTATCTTCGCACAAAACCAGCTGCAAATGCTA 43073 Query 124651 TTCAATTTACCGTCGACAAA 124670 | |||||||| || |||||| Sbjct 43074 TACAATTTACTGTAGACAAA 43093 >seq3289 Length=20206255 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||||| || || || || |||||||| || || | ||| | ||| || Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 14369644 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || ||| | || || || ||||| || || ||||| |||||||| || || Sbjct 14369645 CAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14369704 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | ||| || || | ||||| || ||||| | || || Sbjct 14369705 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14369764 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || || || |||||||||||||||||||||| Sbjct 14369765 ACCCGTGAGGGTTTTTACAAAAATTTGCATCG 14369796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451926754958800