Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3134 114 2e-20 >seq3134 Length=2474545 Score = 114 bits (126), Expect = 2e-20 Identities = 305/460 (66%), Gaps = 12/460 (3%) Strand=Plus/Minus Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 ||||||||||| |||||||||||||| || ||||| | ||||| || | ||||||| Sbjct 573898 GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCG 573839 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATC 160045 ||||| | |||||| || |||||||| || | ||||| |||||||| ||||| Sbjct 573838 GGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATG 573779 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATGG 160102 ||||| || || ||||| || | || | ||| ||||| || || || | | || Sbjct 573778 CCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAG-GAT-- 573722 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCG 160159 |||| ||||| || ||||| ||| | ||| |||||| || | || Sbjct 573721 ATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAAC--TGC-CGGCATTGTTTCAATTGCA 573665 Query 160160 TTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTAC 160219 ||||| | || ||| | | ||| || || ||||||| |||| Sbjct 573664 TTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTAC 573605 Query 160220 ATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGA 160279 ||||| | ||| ||||| || ||||| ||||||||| ||||| | ||||| | Sbjct 573604 ATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTA 573545 Query 160280 TACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCC 160339 ||| || ||||| | || | | ||||||| | ||||| | || |||| ||| Sbjct 573544 ATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCG 573485 Query 160340 GCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 ||||| || |||| || || || |||||||| | ||||| Sbjct 573484 GCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGT 573445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795020719376800