Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq359 149 1e-30 seq3603 141 2e-28 seq3289 131 4e-25 seq3378 125 2e-23 >seq359 Length=456481 Score = 149 bits (164), Expect = 1e-30 Identities = 164/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| ||||||||||| | ||| | |||||| Sbjct 66103 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCT 66044 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||||||||| |||||||||||||| ||| ||||| || || Sbjct 66043 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCT 65984 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| || || | | || || |||| ||||| ||| Sbjct 65983 TGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTC 65924 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| | |||||| || || || || |||||| Sbjct 65923 TTTCCCGTCAAAGTTTTTACGAAGATCTG---CATTTT 65889 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| ||||| ||||| |||| |||||| || | ||| || | ||||||| Sbjct 66559 AGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCT 66500 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||| ||||| |||||||||||||| ||| ||||| || ||| Sbjct 66499 TCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCC 66440 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | ||| || | | || || |||| || || ||| Sbjct 66439 TGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTC 66380 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || || Sbjct 66379 TTTCCCGTCAGGGTCTTCACGAAGATCTG 66351 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| |||||||||| | ||| | |||||| Sbjct 66331 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCT 66272 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||||||||| |||||||||||||| ||| ||||| || || Sbjct 66271 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCT 66212 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | | || || |||| || || ||| Sbjct 66211 TGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTC 66152 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || || Sbjct 66151 TTTCCCGTCAGGGTCTTCACGAAGATCTG 66123 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| ||||||||||| |||| |||||||||| | ||| | |||||| Sbjct 66787 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCT 66728 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||| ||||| |||||||||||||| ||| ||| || || || Sbjct 66727 TCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 66668 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | | || || |||| || || ||| Sbjct 66667 TGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTC 66608 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || || Sbjct 66607 TTTCCCGTCAGGGTCTTCACGAAGATCTG 66579 >seq3603 Length=2672878 Score = 141 bits (156), Expect = 2e-28 Identities = 168/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | ||||||||||||||| | ||||||||| | | || Sbjct 316351 CGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTG 316292 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| ||||||||||| || || ||| ||| Sbjct 316291 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCT 316232 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || || || ||| || |||| |||||| | | || || ||||| Sbjct 316231 TCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAG 316172 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || ||||| ||||||||||| ||||| |||||| Sbjct 316171 GTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTG---CATTTT 316128 >seq3289 Length=20206255 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||| || |||| |||||||||| | || | |||||||||| |||||| || Sbjct 14369597 AGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAACTGCTTGCC 14369656 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||| || | ||||||||| || ||| |||||||||| ||||| ||||| || Sbjct 14369657 AGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 14369716 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || |||| ||| || | | ||| || || | ||||| |||||||||||||| || Sbjct 14369717 AACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGT 14369776 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 14369777 TTTTACAAAAATTTG 14369791 >seq3378 Length=5191987 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| |||||||| |||| ||||||||| | |||||| | |||||| Sbjct 4216893 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 4216834 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| | ||||||||| || || ||| || || ||| Sbjct 4216833 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 4216774 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | || || || ||||| ||||| ||| Sbjct 4216773 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 4216714 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 4216713 TTGCCAGTCAAGGTCTTGACGAAGATCTG 4216685 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| |||||||| |||| ||||||||| | |||||| | |||||| Sbjct 4217577 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 4217518 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || || ||| || || ||| Sbjct 4217517 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 4217458 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | || || || ||||| ||||| ||| Sbjct 4217457 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 4217398 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 4217397 TTGCCAGTCAAGGTCTTGACGAAGATCTG 4217369 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | ||| |||||||| || | ||||||||| | |||||| Sbjct 4218042 CGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTA 4217983 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| ||||||||||| ||||||||||| | ||||||||| || || ||| || Sbjct 4217982 CGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCC 4217923 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||| || | || || || ||||| Sbjct 4217922 TCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAG 4217863 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 4217862 GTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTG 4217825 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||||||||| | ||| || | |||||| Sbjct 4217121 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 4217062 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||||||||| || || ||| || || ||| Sbjct 4217061 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 4217002 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | || || || ||||| ||||| ||| Sbjct 4217001 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 4216942 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 4216941 TTGCCAGTCAAGGTCTTGACGAAGATCTG 4216913 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||||||||| | ||| || | |||||| Sbjct 4217349 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 4217290 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||||||||| || || ||| || || ||| Sbjct 4217289 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 4217230 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | || || || ||||| ||||| ||| Sbjct 4217229 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTC 4217170 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 4217169 TTGCCAGTCAAGGTCTTGACGAAGATCTG 4217141 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||||||||| | ||| || | |||||| Sbjct 4217805 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 4217746 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||||||||| || || ||| || || ||| Sbjct 4217745 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 4217686 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | || || || ||||| ||||| ||| Sbjct 4217685 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 4217626 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 4217625 TTGCCAGTCAAGGTCTTGACGAAGATCTG 4217597 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||||||||||||| |||| |||||| | |||||| |||| |||||| ||||||| Sbjct 4216811 ATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATCCAGAAG 4216870 Query 200998 GAGTCTACTCTTCAC 201012 ||||| ||| | ||| Sbjct 4216871 GAGTCCACTTTGCAC 4216885 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || ||||||||||| |||||| | || ||| |||| |||||| ||||||| Sbjct 4217039 ATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAACATCCAGAAG 4217098 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| || ||||| || ||| Sbjct 4217099 GAGTCGACCCTTCATCTGGTT 4217119 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || ||||||||||| |||||| | || ||| |||| |||||| ||||||| Sbjct 4217267 ATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAACATCCAGAAG 4217326 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| || ||||| || ||| Sbjct 4217327 GAGTCGACCCTTCATCTGGTT 4217347 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || ||||||||||| |||||| | || ||| |||| |||||| ||||||| Sbjct 4217723 ATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAACATCCAGAAG 4217782 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| || ||||| || ||| Sbjct 4217783 GAGTCGACCCTTCATCTGGTT 4217803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178717230256510