Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq359 132 5e-26
seq3378 129 7e-25
seq3603 125 8e-24
seq3289 113 5e-20
>seq359
Length=456481
Score = 132 bits (146), Expect = 5e-26
Identities = 147/196 (75%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| | || || || ||||||||||||||
Sbjct 66083 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 66024
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | | ||||||||| |||||| ||| | |
Sbjct 66023 GATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTT 65964
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||| ||| | ||||| |||| |||||||| || ||||||| ||||| ||
Sbjct 65963 CTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTTAC 65904
Query 46582 AAAGATTTGCATTTTG 46597
||||| |||||||||
Sbjct 65903 GAAGATCTGCATTTTG 65888
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| || |||||||| | || || || ||||||||||||||
Sbjct 66311 CTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 66252
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | | ||||||||| |||||| ||||| |
Sbjct 66251 GATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 66192
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||| ||| | ||||| |||| || ||||| || |||||||| || || ||
Sbjct 66191 CTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCAC 66132
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 66131 GAAGATCTGCAT 66120
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| || |||||||| | || || || ||||||||||| ||
Sbjct 66767 CTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAA 66708
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || ||||||||| |||||| ||||| |
Sbjct 66707 GATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 66648
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||| ||| | ||||| |||| || ||||| || |||||||| || || ||
Sbjct 66647 CTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCAC 66588
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 66587 GAAGATCTGCAT 66576
Score = 102 bits (112), Expect = 9e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||| || || | ||||| | || || || ||||||||||| ||
Sbjct 66538 TCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAG 66479
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| ||||||||||| | || | | |||||||||| ||||| ||| | ||
Sbjct 66478 ATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTC 66419
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || || | ||||| |||| || ||||| || |||||||| || || ||
Sbjct 66418 TCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACG 66359
Query 46583 AAGATTTGCAT 46593
||||| |||||
Sbjct 66358 AAGATCTGCAT 66348
>seq3378
Length=5191987
Score = 129 bits (142), Expect = 7e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | ||||| ||||| || |||||| ||||| ||||||||||
Sbjct 4217594 TGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGG 4217535
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | ||| || | || || ||||||||||||||||| ||||| |||||||| || | |
Sbjct 4217534 ACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 4217475
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||||| |||||| ||| | || | | || ||| | ||||
Sbjct 4217474 GAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCA 4217415
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| |||| || || || ||||| |||||
Sbjct 4217414 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217366
Score = 125 bits (138), Expect = 8e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | ||||| ||||| || |||||| ||||| ||||||||||
Sbjct 4216910 TGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGG 4216851
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | ||| || | || || |||||||| |||||||| ||||| |||||||| || | |
Sbjct 4216850 ACAAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 4216791
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||||| |||||| ||| | || | | || ||| | ||||
Sbjct 4216790 GAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCA 4216731
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
| |||| |||||||| ||||| |||| || || || ||||| ||||| ||
Sbjct 4216730 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATATT 4216679
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||| ||||| || |||||| || || ||||||||||| | ||| || |
Sbjct 4218037 ACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCC 4217978
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||||||||| ||||| |||||||| || | || | | ||||||
Sbjct 4217977 ATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTT 4217918
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | || | | || ||| | ||||| |||| |||||
Sbjct 4217917 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4217858
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| |||| || || || ||||| |||||
Sbjct 4217857 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||| ||||| ||||||||||| | ||||| | || ||
Sbjct 4217118 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCC 4217059
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| ||||||||| ||||| ||||| |||||||| || | || | || |||||||||| |
Sbjct 4217058 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 4216999
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | || | | || ||| | ||||| |||| |||||||| |||
Sbjct 4216998 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 4216939
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || || || ||||| |||||
Sbjct 4216938 CCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||| ||||| ||||||||||| | ||||| | || ||
Sbjct 4217802 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCC 4217743
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| ||||||||| ||||| ||||| |||||||| || | || | || |||||||||| |
Sbjct 4217742 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 4217683
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | || | | || ||| | ||||| |||| |||||||| |||
Sbjct 4217682 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 4217623
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || || || ||||| |||||
Sbjct 4217622 CCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||| ||||| ||||||||||| | ||||| | || ||
Sbjct 4217346 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCC 4217287
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| ||||||||| ||||| ||||| |||||||| || | || | | |||||||||| |
Sbjct 4217286 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 4217227
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | || | | || ||| | ||||| |||| ||||| || |||
Sbjct 4217226 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTCTTG 4217167
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || || || ||||| |||||
Sbjct 4217166 CCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138
>seq3603
Length=2672878
Score = 125 bits (138), Expect = 8e-24
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| ||||| || ||||||||| || |||||||| || || ||||| |
Sbjct 316346 ACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCC 316287
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||||||||| || |||| |||||||| || | || | | || ||
Sbjct 316286 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTT 316227
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||| || ||||| || | | ||||| | || || |||| |||||
Sbjct 316226 GTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGAT 316167
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599
||| ||||| || || ||||| ||||||||||||||||| ||
Sbjct 316166 GGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTTCCA 316125
>seq3289
Length=20206255
Score = 113 bits (124), Expect = 5e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||||| ||| ||| || |||||||||||||| || || ||||| | || ||
Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 14369644
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
| ||||||||| ||||| || || |||||||| || | || | | || ||||||
Sbjct 14369645 CAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14369704
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| || | || | | || || || ||| || || | |||||||| ||
Sbjct 14369705 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14369764
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || ||||| ||||| ||||||||
Sbjct 14369765 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565142804055600
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