Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq3378 105 5e-18
seq3289 98.7 7e-16
>seq3378
Length=5191987
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| |||| |||||| ||||| ||||||||| || || || || || || |||| |
Sbjct 4218048 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4217989
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| ||| |||| |||| || || ||| | || || |||||||||||||| | |||
Sbjct 4217988 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217929
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| || || ||||| || || |||| || | | || || | |||||
Sbjct 4217928 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 4217869
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || || || || || || || || |||||||||||||||
Sbjct 4217868 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || |||| ||| || ||||| ||||||||| || || || || || || ||||
Sbjct 4217593 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4217534
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|||| ||| |||| |||| || || ||| | || || |||||||||||||| | |||
Sbjct 4217533 CAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4217474
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| || || ||||| || || |||| || | | || || | |||||
Sbjct 4217473 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217414
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || || || || || || || || |||||||||||||||
Sbjct 4217413 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || |||| ||| || ||||| ||||||||| || || || || || || ||||
Sbjct 4216909 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4216850
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|||| ||| |||| |||| || || ||| | || || |||||||||||||| | |||
Sbjct 4216849 CAAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4216790
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| || || ||||| || || |||| || | | || || | |||||
Sbjct 4216789 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4216730
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || || || || || || || || ||||||||||||||
Sbjct 4216729 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682
>seq3289
Length=20206255
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550
|||| || |||| || || |||||||||||||| ||||| || ||||| || || |
Sbjct 14369566 CGCCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAG 14369625
Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
| ||| |||| ||||| || || || | |||||||||||||||||||| | |
Sbjct 14369626 AAAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAG 14369685
Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| | ||||||||||| || || ||||| || | | || || | ||| |
Sbjct 14369686 GAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGA 14369745
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | ||| || || |||||||| | |||||||| || || |||||
Sbjct 14369746 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347312319838490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |