Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3134 430 1e-115 seq3603 154 1e-32 seq359 131 2e-25 seq3289 127 2e-24 seq3378 118 1e-21 >seq3134 Length=2474545 Score = 430 bits (476), Expect = 1e-115 Identities = 593/826 (72%), Gaps = 10/826 (1%) Strand=Plus/Minus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 |||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| | | Sbjct 574189 TGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTCC 574130 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC---AGGTCGACGAGC 132723 || || || || || ||||||||| | ||| |||| | || || || ||| Sbjct 574129 ATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTG---CCGACCCCAAGTTCAACCAGC 574073 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | |||||||| ||||| || |||| ||||| | ||||||| | || | || | Sbjct 574072 AGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAA 574013 Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 |||||||| || || || ||||| || || |||| || || |||| || ||| Sbjct 574012 TTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGATC 573953 Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903 || | | |||| | || || || ||||||||||||| |||||||| | ||||||| Sbjct 573952 TCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACAGCAAAG 573893 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 |||||||||| |||||||| | ||| || |||||||| |||||| | ||||||||| Sbjct 573892 TCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCATA 573833 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 ||||| || || || |||||||| || | || || ||||| |||||||| |||||| Sbjct 573832 AGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCTCA 573773 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083 || || || || || | | |||||| || || | ||| | || || ||||| Sbjct 573772 ACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCCAAGAA 573713 Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 |||||||| |||||||| || || |||||| ||||| || || || || | | Sbjct 573712 AGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGA--T 573655 Query 133144 AGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201 | | | || | ||| ||| | || ||||| || ||| ||||||||||||| Sbjct 573654 AATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGT 573595 Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261 | || ||||||||||| || |||||||| || ||||| || ||||| | ||| |||| Sbjct 573594 GGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTT 573535 Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 | || ||||||||||||||||| ||||| || ||||| ||| |||||| ||||||| Sbjct 573534 CCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGG 573475 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGT 133381 |||| || || |||||||| ||||||||||| | | ||| ||||||| | | Sbjct 573474 CCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGTCAGTCAGAT 573415 Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||| ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 573414 CCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 >seq3603 Length=2672878 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || ||||| ||||| ||||| ||||||||| | || |||||| || Sbjct 316128 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 316187 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | ||||||| |||||||| || ||||| | || Sbjct 316188 TCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 316247 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| |||||||| || | |||||||| |||||| Sbjct 316248 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 316307 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||||| |||| |||| |||||||||||| || | || || Sbjct 316308 AACATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 316357 >seq359 Length=456481 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||||||||| | ||||| || ||||||||| | || || ||| | Sbjct 65889 AAAATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAGCCT 65948 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | | |||| | || | || |||| ||||| |||||||| || | || Sbjct 65949 TCCGATACGATCGAGAACG-TGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGA 66007 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| || ||||| || | ||||| ||| ||||| Sbjct 66008 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTA 66067 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| || || ||||| || ||| || | || || Sbjct 66068 CAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGG 66118 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || ||||| || | || || ||| | | Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || || | ||||| |||||||| || | ||||| Sbjct 66408 GATACCATTGAGAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCA 66466 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| || ||||| || | ||||| | || ||||| Sbjct 66467 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAA 66526 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| |||| || || |||||||| ||| || | || || Sbjct 66527 CATCCAGAAGGAATCGACCCTCCACTTGGTGCTTCGTCTGCGTGGTGG 66574 >seq3289 Length=20206255 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| |||||||| || |||||||| | || ||||| | | Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||||| || |||| |||||||| |||||||| | || || Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||| |||| || | |||||||| |||||||| Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAAT 14369615 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||||||||||| || || | || ||| Sbjct 14369614 ATCCAGAAAGAGTCTACTTTGCATTTGGTGCTCCGCCTGCGTGGTGGC 14369567 >seq3378 Length=5191987 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 4216910 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4216969 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 4216970 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 4217029 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||| |||| || | |||||| | |||||||||| Sbjct 4217030 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAAC 4217089 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| || ||| |||| || ||| || | || ||| Sbjct 4217090 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGC 4217137 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 4217594 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4217653 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 4217654 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 4217713 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||| |||| || | |||||| | |||||||||| Sbjct 4217714 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAAC 4217773 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| || ||| |||| || ||| || | || ||| Sbjct 4217774 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGC 4217821 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || |||||| | || || ||| | || Sbjct 4217138 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACCTTGGAGGTGGAGCCATCC 4217197 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 4217198 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 4217257 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||| |||| || | |||||| | |||||||||| Sbjct 4217258 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAAC 4217317 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| || ||| |||| || ||| || | || ||| Sbjct 4217318 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGC 4217365 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 4217366 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4217425 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 4217426 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 4217485 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| |||||||| || | || || | |||||||||| Sbjct 4217486 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 4217545 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||| |||||||| ||| || | || ||| Sbjct 4217546 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 4217593 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | Sbjct 4216678 AAATATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCC 4216737 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | | | | |||| | || |||| ||||| ||||| |||||| | || Sbjct 4216738 ATCCGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGA 4216797 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| | || | ||| || || |||||||| || | || || | |||||| Sbjct 4216798 TCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTA 4216857 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || |||| |||||||| ||| || | || ||| Sbjct 4216858 CAACATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 4216909 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 4217822 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4217881 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 4217882 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 4217941 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| |||||||| || | || || | |||||||||| Sbjct 4217942 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 4218001 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || |||| ||||| |||||| || | ||||| Sbjct 4218002 ATTCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 4218048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500088208275200