Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3289 109 2e-18
seq3169 104 9e-17
seq3385 91.5 6e-13
seq3250 84.2 9e-11
>seq3289
Length=20206255
Score = 109 bits (120), Expect = 2e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || ||||| || || ||||| || || |||||||| || ||| | ||
Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | ||||| || || || || || |||||||||||||| |||||
Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207
|| |||||||||||| | || || || | ||||||||
Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGG 14369637
>seq3169
Length=10161210
Score = 104 bits (114), Expect = 9e-17
Identities = 204/299 (68%), Gaps = 6/299 (2%)
Strand=Plus/Minus
Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378
||||| || || || || || || |||||||||||| |||| || || || |||||||||
Sbjct 3947215 GATGCGGTTATCACAGTGCCGGCATATTTCAATGATTCACAGCGTCAGGCCACTAAAGAT 3947156
Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438
|| || || || ||||| ||||| || ||||| || ||||| || || || || ||
Sbjct 3947155 GCCGGCTCCATAGCCGGTTTGAATGTGCTCCGAATCATCAATGAGCCGACGGCTGCCGCC 3947096
Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498
||||| ||||| || ||| || || || | || ||| | || ||||||||
Sbjct 3947095 CTAGCCTATGGCCT-GGACAA--GAACCTAAAGGGGGAGCGTAATGTGTTGATATTTGAT 3947039
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTGAA 451555
|| || || || || |||| || |||| | || || || || | | || ||
Sbjct 3947038 TTGGGCGGCGGCACCTTTGATGTCTCCATACTGACCATCGATGAGGGTTCGCTGTTCGAG 3946979
Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGT 451614
|| ||||| || || ||||| ||||| || || || || |||| ||| | ||||
Sbjct 3946978 GTCAAGGCCACTGCGGGCGATACACATCTGGGCGGCGAGGACTTTGACAATCGACTTGT 3946920
>seq3385
Length=25233164
Score = 91.5 bits (100), Expect = 6e-13
Identities = 241/364 (66%), Gaps = 3/364 (1%)
Strand=Plus/Minus
Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302
||| || || | || || ||||| || || || |||| ||||||||| || ||| |
Sbjct 23139367 TCCGGAGGAGGTGTCCTCCATGGTGCTGACCAAGATGAGAGAAACAGCTGAGGCGTATCT 23139308
Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362
|| | ||||| ||||| || | || ||||| || |||||||||||| | || |
Sbjct 23139307 GGGCGGCACGGTTACCGATGCGGTGGTCACAGTTCCGGCCTATTTCAATGATTCGCAGAG 23139248
Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422
||| || || || || || || || || || | ||||| || || || || |||||
Sbjct 23139247 GCAGGCGACCAAGGACGCGGGCACCATAGCCGGGCTCAATGTGCTGCGCATCATCAATGA 23139188
Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482
|| || || || || | || ||||| || ||| || | | | | ||| || ||
Sbjct 23139187 GCCGACGGCGGCGGCGATTGCCTATGGCCT-GGACAAGC-AGGGCACCAG-TGAGCGCAA 23139131
Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542
| | | | || ||||| ||||| || || ||| || || || | || || ||
Sbjct 23139130 TGTGCTCATTTTCGATTTGGGTGGCGGCACCTTCGATGTCTCCGTGCTGACCATCGAGGA 23139071
Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602
|| | ||||| || ||||| || || ||||| ||||| || || || || |||||
Sbjct 23139070 CGGCATCTTTGAGGTGAAGGCCACGGCCGGCGATACCCATCTGGGCGGAGAGGACATTGA 23139011
Query 451603 TAAT 451606
||||
Sbjct 23139010 TAAT 23139007
>seq3250
Length=7717345
Score = 84.2 bits (92), Expect = 9e-11
Identities = 239/366 (65%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297
||||| || || || || || | |||||||| || ||||| ||||| || |||
Sbjct 1580361 TTTGCGCCCGAGGAGATCTCCGCCATGGTTCTCGGCAAGATGAAGGAAACCGCCGAAGCC 1580420
Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357
||| | || || || |||| || | ||||| ||||| || || || |||||
Sbjct 1580421 TATCTGGGCAAGAAGGTCACCCATGCTGTTGTCACTGTGCCCGCCTACTTTAACGATGCC 1580480
Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417
|| || || || || || |||||||| ||||| ||| | | || | || || ||
Sbjct 1580481 CAGCGCCAGGCGACCAAGGATGCAGGTGTCATTGCCGGTCTGCAGGTGATGCGCATCATC 1580540
Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477
||||| || ||||| ||||| | ||||| || || ||| || | || |||||||
Sbjct 1580541 AATGAGCCGACAGCGGCTGCCATTGCATACGGTCT-GGACAAGAAGGAGGGCGAGAAGAA 1580599
Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537
| | | || |||||||| || || || || |||| || | || | ||
Sbjct 1580600 -----TGTGCTTGTCTTTGATTTGGGCGGCGGCACCTTTGATGTCTCCCTGCTGACCATC 1580654
Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597
|| |||| || || || || || ||||||||||| ||||| | || || || ||
Sbjct 1580655 GACAATGGTGTCTTCGAGGTGGTTGCCACCAATGGTGACACTCACTTGGGTGGCGAGGAC 1580714
Query 451598 ATTGAT 451603
|||||
Sbjct 1580715 TTTGAT 1580720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975375903041240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |