Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3289 109 2e-18 seq3169 104 9e-17 seq3385 91.5 6e-13 seq3250 84.2 9e-11 >seq3289 Length=20206255 Score = 109 bits (120), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || ||||| || || |||||||| || ||| | || Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | ||||| || || || || || |||||||||||||| ||||| Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 || |||||||||||| | || || || | |||||||| Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGG 14369637 >seq3169 Length=10161210 Score = 104 bits (114), Expect = 9e-17 Identities = 204/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || || || || || || |||||||||||| |||| || || || ||||||||| Sbjct 3947215 GATGCGGTTATCACAGTGCCGGCATATTTCAATGATTCACAGCGTCAGGCCACTAAAGAT 3947156 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || || || ||||| ||||| || ||||| || ||||| || || || || || Sbjct 3947155 GCCGGCTCCATAGCCGGTTTGAATGTGCTCCGAATCATCAATGAGCCGACGGCTGCCGCC 3947096 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 ||||| ||||| || ||| || || || | || ||| | || |||||||| Sbjct 3947095 CTAGCCTATGGCCT-GGACAA--GAACCTAAAGGGGGAGCGTAATGTGTTGATATTTGAT 3947039 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTGAA 451555 || || || || || |||| || |||| | || || || || | | || || Sbjct 3947038 TTGGGCGGCGGCACCTTTGATGTCTCCATACTGACCATCGATGAGGGTTCGCTGTTCGAG 3946979 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGT 451614 || ||||| || || ||||| ||||| || || || || |||| ||| | |||| Sbjct 3946978 GTCAAGGCCACTGCGGGCGATACACATCTGGGCGGCGAGGACTTTGACAATCGACTTGT 3946920 >seq3385 Length=25233164 Score = 91.5 bits (100), Expect = 6e-13 Identities = 241/364 (66%), Gaps = 3/364 (1%) Strand=Plus/Minus Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302 ||| || || | || || ||||| || || || |||| ||||||||| || ||| | Sbjct 23139367 TCCGGAGGAGGTGTCCTCCATGGTGCTGACCAAGATGAGAGAAACAGCTGAGGCGTATCT 23139308 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 || | ||||| ||||| || | || ||||| || |||||||||||| | || | Sbjct 23139307 GGGCGGCACGGTTACCGATGCGGTGGTCACAGTTCCGGCCTATTTCAATGATTCGCAGAG 23139248 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||| || || || || || || || || || | ||||| || || || || ||||| Sbjct 23139247 GCAGGCGACCAAGGACGCGGGCACCATAGCCGGGCTCAATGTGCTGCGCATCATCAATGA 23139188 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482 || || || || || | || ||||| || ||| || | | | | ||| || || Sbjct 23139187 GCCGACGGCGGCGGCGATTGCCTATGGCCT-GGACAAGC-AGGGCACCAG-TGAGCGCAA 23139131 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542 | | | | || ||||| ||||| || || ||| || || || | || || || Sbjct 23139130 TGTGCTCATTTTCGATTTGGGTGGCGGCACCTTCGATGTCTCCGTGCTGACCATCGAGGA 23139071 Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || | ||||| || ||||| || || ||||| ||||| || || || || ||||| Sbjct 23139070 CGGCATCTTTGAGGTGAAGGCCACGGCCGGCGATACCCATCTGGGCGGAGAGGACATTGA 23139011 Query 451603 TAAT 451606 |||| Sbjct 23139010 TAAT 23139007 >seq3250 Length=7717345 Score = 84.2 bits (92), Expect = 9e-11 Identities = 239/366 (65%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| || || || || || | |||||||| || ||||| ||||| || ||| Sbjct 1580361 TTTGCGCCCGAGGAGATCTCCGCCATGGTTCTCGGCAAGATGAAGGAAACCGCCGAAGCC 1580420 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | || || || |||| || | ||||| ||||| || || || ||||| Sbjct 1580421 TATCTGGGCAAGAAGGTCACCCATGCTGTTGTCACTGTGCCCGCCTACTTTAACGATGCC 1580480 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || || |||||||| ||||| ||| | | || | || || || Sbjct 1580481 CAGCGCCAGGCGACCAAGGATGCAGGTGTCATTGCCGGTCTGCAGGTGATGCGCATCATC 1580540 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 ||||| || ||||| ||||| | ||||| || || ||| || | || ||||||| Sbjct 1580541 AATGAGCCGACAGCGGCTGCCATTGCATACGGTCT-GGACAAGAAGGAGGGCGAGAAGAA 1580599 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 | | | || |||||||| || || || || |||| || | || | || Sbjct 1580600 -----TGTGCTTGTCTTTGATTTGGGCGGCGGCACCTTTGATGTCTCCCTGCTGACCATC 1580654 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||| || || || || || ||||||||||| ||||| | || || || || Sbjct 1580655 GACAATGGTGTCTTCGAGGTGGTTGCCACCAATGGTGACACTCACTTGGGTGGCGAGGAC 1580714 Query 451598 ATTGAT 451603 ||||| Sbjct 1580715 TTTGAT 1580720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975375903041240