Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3383 327 9e-84 seq3169 109 4e-18 seq3133 96.9 3e-14 >seq3383 Length=19223366 Score = 327 bits (362), Expect = 9e-84 Identities = 959/1463 (66%), Gaps = 16/1463 (1%) Strand=Plus/Plus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || ||||| |||||||| |||||||| | ||| || || || ||||| || || || Sbjct 7897600 GGCGGTAACATTCAGAATACCGTTGGCATCAATATCGAAGGTCACCTCAATCTGGGGCAC 7897659 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || | | || |||||||| || || | ||| | |||| ||| ||||| || Sbjct 7897660 ACCGCGTGGTGCTGGTGGGATACCCGACAGCTCGAATTTGCCCAACAGATTGTTATCCTT 7897719 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | || || || ||| | | |||||| || ||| |||||||| ||||| Sbjct 7897720 GGTCATGGCGCGCTCGCCTTCGTACACTTGGATCAACACACCAGGCTGATTATCCGAATA 7897779 Query 517438 AGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 || || || |||| | | ||| ||||| || ||||| | | || | | Sbjct 7897780 GGTGGTGAAGG-TCTGCGTCTGCTTAGTGGGAATGGTGGTGTTACGCTTGATGAGCACGC 7897838 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | ||||| || || || | ||| ||||| || || || ||||| | || | | Sbjct 7897839 TCATCACGCCACCAGCAGTCTCGATACCCAGAGACAGGGGGGTAACATCGAGCAGCAGCA 7897898 Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCA 517615 || || | | | | | ||| ||||| | || || || | ||||||||| Sbjct 7897899 GATCCTGCACCTCCTGCGACTTGTCACCGTGCAAGA-TGGCAGCCTGGACGGCAGCACCA 7897957 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT- 517674 || |||||||| ||||| ||||| | | | || || | || || ||||| | || Sbjct 7897958 TAGGCAACAGCCTCATCGGGATTGATGGACTTGTTCAGCTCCTTGCCGTTGAACAGATCC 7898017 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || || | | | ||||| || ||||||| || || || || | ||||| || || Sbjct 7898018 TGTAACAGGCGCTGC-ACCTTGGGGATACGAGTGGAGCCACCGACCAGCACAATATCGTG 7898076 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA--GACCC 517792 | || || ||||| || | ||| | | | || || ||||| || | | | Sbjct 7898077 AATAGCCGACTTGTCCAGCTTGGCATCACGCAGAGCCTTCTCCACGGGATCCATGGTGCT 7898136 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852 || ||| | || | || || ||||| ||| | || | | | || || Sbjct 7898137 GCGGAAAAGA--TCGGCGTTCAGCTCCTCGAAACGAGCACGCGTGATCGAGGTATAGAAA 7898194 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 || | |||||||||| ||||||| |||||| ||| ||||| || || ||||| | | Sbjct 7898195 TCGGTACCTTCGAACAGCGAATCAATTTCAATGCTAGCCTGAGTGGAGGATGATAGCGTA 7898254 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCA 517970 || || ||||| ||||| || || | || | || | || ||| ||| | ||| Sbjct 7898255 CGCTTTGCACGCTCACAGGCGGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGTCA 7898312 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 |||| | || | || | |||||| || | ||| | || || |||||||| |||| Sbjct 7898313 AATCCTTCTTGTGCTTGCGCTTGAACTCCTGTACAAAGTGAGTGACTAGACGATTGTCAA 7898372 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || ||||| ||||| | |||| || | ||||| | | || | ||| | || || | Sbjct 7898373 AGTCCTCACCACCCAAATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCCGTCAT 7898432 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| ||||| || | ||||| ||| || || |||| ||| ||||| | ||||| Sbjct 7898433 CAATAGACAGAATGGAGACATCGAAGGTACCGCCGCCCAAATCGAAAATCAACACATTAC 7898492 Query 518151 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 ||| | || || || |||||||| |||| || || |||||||| || |||| Sbjct 7898493 GCTCTCCAACCGCCTTCTTGTCCAGACCATAGGCAATGGCCGCGGCAGTTGGCTCGTTAA 7898552 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 |||| | ||| || || | ||| || || | || ||||| ||||| || || | |||| Sbjct 7898553 TAATACGCAATACGTTCAAACCGGCGATGGTACCAGCATCCTTAGTCGCCTGACGCTGTG 7898612 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 | ||||| ||||| ||||| ||||| || ||||||| || || || || | || | Sbjct 7898613 AGTCGTTGAAATAGGCAGGCACAGTGATGACGGCATTGGTAACCGTCTTGCCCAGGTACG 7898672 Query 518331 CGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATT 518390 | || || | |||||||| | || | ||| || || || | || |||||| | Sbjct 7898673 CCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGAAA 7898731 Query 518391 G-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 518449 | ||| |||| | || | ||||||| | || || | |||| ||| || Sbjct 7898732 GTCTTCTTCTCATCCTTGTACGTAACTTCAATCTTGGGCTTGCCATCAACGCTAACGACC 7898791 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 | || ||||||| ||||| || ||||| || |||| || | | |||||| Sbjct 7898792 TCGAAGGGCCAGTGCTTCATGTCGGATTGCACGGCCGCATCATCGAATTTGCGACCAATA 7898851 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 | || || |||||||| || || | |||||||| || || | || | ||||| ||| Sbjct 7898852 AGACGCTTAGCATCAAAGATCGTTTGAGTTGGATTCATGGCCACCTGGTTCTTGGCGGCA 7898911 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || ||||||| | | || ||||| || || | |||||| ||||| || || |||||||| Sbjct 7898912 TCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAGGATGGGGTGGTACGATTACCC 7898971 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 518689 ||||| || ||||| || ||||| || |||| || | ||||| || ||| | ||| Sbjct 7898972 TGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGGTT 7899031 Query 518690 GTTCCTAAATCAATACCAATAGC 518712 || || ||||||||||||| ||| Sbjct 7899032 GTGCCCAAATCAATACCAACAGC 7899054 >seq3169 Length=10161210 Score = 109 bits (120), Expect = 4e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| || || ||||| ||||| || |||| || || |||| | ||||| ||||| Sbjct 3948065 TGATTCTTAGCGGCATCGCCAATAAGGCGTTCCGTTTCATTAAAGGCCACATACGATGGC 3948124 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 ||||||||||| || |||||||| ||||||||||| |||||| || ||||| ||||| Sbjct 3948125 GTTGTGCGATTGCCCTGATCATTGGCAATAATTTCCACTTTATTGTTCTGCCAGACACCC 3948184 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || | | ||||| || | ||| || ||||| || Sbjct 3948185 ACGCAGGAATAGGTTGTGCCCAGATCGATGCCAATTGC 3948222 Score = 100 bits (110), Expect = 2e-15 Identities = 223/334 (67%), Gaps = 3/334 (1%) Strand=Plus/Plus Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 |||||| || | || || ||||| ||| | | ||||| ||||| ||||| || | Sbjct 3946882 TTTTATGCTTCCGTTTAAACTCTTCCACAAAGTGATTGACAAGTCGATTGTCAAAGTCCT 3946941 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCAA 518093 | || |||| | |||| || | || || | || | ||| || || || || | Sbjct 3946942 CGCCGCCCAGATGTGTATCGCCCGCAGTGGCCTTGACCTCGAACAGCGAACCCTCATCGA 3947001 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | || | | |||||| ||| || || |||| |||||| || | ||||| | Sbjct 3947002 TGGTCAGTATGGAGACATCAAAGGTGCCGCCGCCCAAATCAAATATCAACACATTACGCT 3947061 Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 | | | |||| || || || ||||| || | || ||||| || || ||||| || | Sbjct 3947062 CCCCCTTTAGGTTCTTGTCCAGGCCATAGGCTAGGGCGGCAGCCGTCGGCTCATTGATGA 3947121 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 ||| | ||||| | ||| || || || |||||||||||||| || | ||||||| Sbjct 3947122 TTCGGAGCACATTCAAACCGGCTATGGAGCCGGCATCTTTAGTGGCCTGACGCTGTGAAT 3947181 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 | || |||||||| || || || ||||| ||||| Sbjct 3947182 CATTGAAATATGCCGGCACTGTGATAACCGCATC 3947215 >seq3133 Length=4096053 Score = 96.9 bits (106), Expect = 3e-14 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACC 518505 ||||| |||||||||| ||||| || ||||| |||||| |||| || | | || Sbjct 3078762 ACTTTGAATGGCCAGTGCTTCATGTCATCTTGAAT-CTTTGGATCATCGAACTTGCGTCC 3078704 Query 518506 AATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGC 518565 ||| || ||||| || || || | | | || | ||||| || || | || | ||||| Sbjct 3078703 AATCAAACGTTTCGCGTCGAAGACACTGTTCTTCGGATTCATGGCCACCTGGTTCTTGGC 3078644 Query 518566 TGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATT 518625 || |||||||||| | || | || ||||||| ||||| || || |||||||| Sbjct 3078643 CGCGTCTCCAATCAACCGCTCCGAGTCGGTAAATGCCACATAGCTGGGCGTGGTGCGATT 3078584 Query 518626 ACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAA 518685 || || || || || || || || || || || | || | ||||| || || | Sbjct 3078583 GCCCTGGTCGTTGGCTATTATCTCCACCTTGCCGTGCTGGAAGACACCCACGCACGAGTA 3078524 Query 518686 AGTTGTTCCTAAATCAATACCAATAGC 518712 || ||||| | |||||||||||| || Sbjct 3078523 CGTGGTTCCCAGATCAATACCAATGGC 3078497 Score = 91.5 bits (100), Expect = 1e-12 Identities = 182/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACC 518505 ||||| |||||||||| ||||| || ||||| |||||| |||| || | | || Sbjct 3076531 ACTTTGAATGGCCAGTGCTTCATGTCATCTTGAAT-CTTTGGATCATCGAACTTGCGTCC 3076589 Query 518506 AATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGC 518565 ||| || ||||| || || || | | || | ||||| || || | || | ||||| Sbjct 3076590 AATCAAACGTTTCGCGTCGAAGACGCTGTTCTTCGGATTCATGGCCACCTGGTTCTTGGC 3076649 Query 518566 TGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATT 518625 || |||||||||| | || | || ||||||| ||||| || || |||||||| Sbjct 3076650 CGCGTCTCCAATCAACCGCTCCGAGTCGGTAAATGCCACATAGCTGGGCGTGGTGCGATT 3076709 Query 518626 ACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAA 518685 || || || || || || || || || || || | || | ||||| || || | Sbjct 3076710 GCCCTGGTCGTTGGCTATTATCTCCACCTTGCCGTGCTGGAAGACACCCACGCACGAGTA 3076769 Query 518686 AGTTGTTCCTAAATCAATACCAATAGC 518712 || || || |||||||||||||| || Sbjct 3076770 CGTGGTGCCCAAATCAATACCAATGGC 3076796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780150996832180