Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq466 129 7e-25 seq3134 98.7 1e-15 seq3023 98.7 1e-15 >seq466 Length=100518 Score = 129 bits (142), Expect = 7e-25 Identities = 620/965 (64%), Gaps = 27/965 (3%) Strand=Plus/Plus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 |||||| ||||||||||| || || ||||||| |||||| | |||||| ||| || Sbjct 42017 TCTCAAGTGGAGACTGGTACCCCTTACATGCTTTTTAAAGACTCGTGTAACAGAAAAAGC 42076 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 |||||| | ||| | || || ||| | || | || || ||||| | || | | Sbjct 42077 AATCAACAAAATGTTGGAACTATAAAGTGCAGTAATTTATGCACGGAAATTGTTGAGTAT 42136 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| ||| || | ||||| ||||| | |||||||| || || || || |||| Sbjct 42137 TCAGCGCCAGACGAAATAGCTGTATGTAATTTAGCATCAATAGCCCTAAACATGTTTGTG 42196 Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535 | || ||| | | || | ||||||| | || || || |||| ||| || Sbjct 42197 ACGGCCGA---AAAATCTTACGACTTCAAAAAACTGAAAGATGTAACTAAAATTGTTACC 42253 Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAAT 112593 |||||||| || | | | ||||||| ||| | ||| ||| ||| ||| || |||| Sbjct 42254 AAAAACCTGAATAAAATAATTGATATAAACTATTATCCC-TTGCCAGA-GGCAAAAAAAT 42311 Query 112594 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTC 112653 | ||| | | ||||| || |||||| | ||||| ||||| | || |||| ||| |||| Sbjct 42312 CAAATTTACGGCACCGCCCTATTGGTATTGGTGTACAAGGGTTTGCAGATGCATTAATTC 42371 Query 112654 T-TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAG 112712 | || | | | | ||| ||| ||||| | ||| | || ||||| Sbjct 42372 TGATGAGGTTTC-CGTATGAAAGCGAAGAAGCATCTCTTTTGAATCAACAAATCTTTGAA 42430 Query 112713 ACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATAT 112772 || || || | | ||| | || || |||| || ||| | || ||||| || ||| Sbjct 42431 ACTATTTACTATGGAGCTTTGGAAGCTAGTTGTGAATTGTCCAAGAAGGATGGCCCGTAT 42490 Query 112773 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGA-AG 112830 ||||||| | || ||||| | |||||| || | || | |||||||||| | || Sbjct 42491 GAAACCTATATTGGAAGTCCAG-TAAGCAAGGGAGTTTTACAGTATGATATGTGGAACAG 42549 Query 112831 GTGAGACCAA-GCTTCACTACGACTGGGACGCTCTCAAGGAACG--CATCAAGGAGAAGG 112887 | ||||| || | |||||||| ||| || || | ||| || || | | Sbjct 42550 AT--CACCAACAGATCTTTGGGACTGGGATCATCTTAA--AAGGTCCATAAAACAGCACG 42605 Query 112888 GTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTT 112945 || || | ||| ||||| | || || || ||||| ||||| ||||| || ||||| | Sbjct 42606 GTGTTAGAAAC--TCTTTGCTAATTGCTCCCATGCCCACAGCATCCACTGCGCAAATAAT 42663 Query 112946 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGC 113005 ||| || ||||| | || || |||||||| | ||||| ||| ||| || | | Sbjct 42664 GGGCAACAATGAGTCGTTCGAGCCCTACACTTCAAACATTTATACAAGACGAGTATTGTC 42723 Query 113006 GGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTG 113065 || |||||| |||| || ||| | || ||| | | ||| ||| | | || Sbjct 42724 CGGTGAGTTTCAAGTTGTAAATCCTCATTTATTGCGTGATTTAACGGAGCTTGATTTGTG 42783 Query 113066 GTCCAAGGATATGAAGGATCTCATGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGG 113124 | | || ||||| ||| || | | |||| | || || || |||||||| | Sbjct 42784 GGATGATGAGATGAAAAATCAAATTATCGCAAGC-CGAGGATCTATACAAAATATAGAAT 42842 Query 113125 ATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATG 113184 ||| || || ||||| | | |||||| || || ||||| || | | ||| Sbjct 42843 CTATACCCGAAGAAATCCGGGATTTGTACAAAACCGTATGGGAGATATCGGTAAAGTCAA 42902 Query 113185 TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTAT 113244 ||| | ||||| || ||| | || || ||||||||||||||| | | || ||| Sbjct 42903 CTATTAAAATGGCAGCTGATAGAGGGGCGTTTATTGATCAAAGTCAATCTTTTAA--TAT 42960 Query 113245 TCATG 113249 ||||| Sbjct 42961 TCATG 42965 >seq3134 Length=2474545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||||| ||||| || |||||||||| ||||||||| |||||||| || ||| Sbjct 573740 CTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTT 573799 Query 102233 CTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||| |||| | |||||| |||||||| || || ||||| || ||| ||||| |||| Sbjct 573800 -TGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCCTCACTTTCTCGAACG 573858 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCA 102319 | || ||||| || ||||||||||| || Sbjct 573859 AACTGATCTCCCGCGACGAGGGACTGCA 573886 >seq3023 Length=5802038 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 |||||| ||||| ||||||| ||||| |||||||| | |||||| | | ||||||||| Sbjct 629042 ATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGATATT 629101 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTCAC 176138 |||||| |||| | | | ||||| || ||||| || || || || || | || | Sbjct 629102 GTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACATCTCGC 629160 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||| || || || | | || || || | ||| ||| || |||||||||| |||| Sbjct 629161 CGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCACCTCAC 629220 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 ||| || | ||| || | |||| |||||||| || ||||| || |||| Sbjct 629221 GCTTATCGTTACGCTTGAAGCACGTAAACATGACCTTGCGCTGACCGGGCTTAAGGCCAT 629280 Query 176259 CCGCCA 176264 || ||| Sbjct 629281 CCACCA 629286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620637416941600