Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3023 89.7 6e-13 seq466 89.7 6e-13 >seq3023 Length=5802038 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 167538 ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTT 167597 |||||||||||| |||| |||||||| || ||||| | ||||| | | |||||| || Sbjct 629042 ATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGATATT 629101 Query 167598 ATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTTCGC 167656 || || ||| | ||| | ||||| || || || || || || ||||| | |||| Sbjct 629102 GTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACATCTCGC 629160 Query 167657 CGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCA- 167715 |||| || || || | |||||||||| | | | ||| || || || |||| |||| Sbjct 629161 CGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCACCTCAC 629220 Query 167716 TCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCA 167775 ||| | | | || ||| || | | |||| |||||||| ||| || || || ||| Sbjct 629221 GCTTATCGTTACGCTT-GAAGCACGTAAACATGACCTTGCGCTGACCGGGCTTAAGGCCA 629279 Query 167776 TC 167777 || Sbjct 629280 TC 629281 >seq466 Length=100518 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 109753 TAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA 109812 || ||||| | |||||||| ||||| ||||||||||||| | ||||| |||||||| Sbjct 42705 TAAATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGAT 42646 Query 109813 GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||||||||||||||||| || || | | ||||| Sbjct 42645 GCTGTGGGCATGGGAGCAATTAGCAAAGAGTTTC 42612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588876389434000