Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3383 105 8e-18 >seq3383 Length=19223366 Score = 105 bits (116), Expect = 8e-18 Identities = 177/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 159535 GAACTGTCATGTATTATGATTACATATCCATCTACACATGGT-GTATTTGAAACAAACAT 159593 || ||||| || | |||||||| ||||| || || ||||| || |||||| ||||| Sbjct 1059592 GAGCTGTCCTGCCTGATGATTACGTATCCTTCCAC-CATGGGAGTTTTTGAAG-AAACAG 1059535 Query 159594 CAGACAGATATGTA-AGATTGTT-CATGAGAATGGTGGTCAGGTATATCTTGATGGTGCA 159651 | | || || | | |||| | || || ||||||||||||| ||||| || || || Sbjct 1059534 TTG-CGGACATCTGCACATTGGTGCACAAGCATGGTGGTCAGGTGTATCTAGACGGAGCC 1059476 Query 159652 AATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCAT 159711 || | || || ||||| ||||| ||| | |||||||| || || | ||| Sbjct 1059475 AACATGAACGCCCAGGTGGGTCTGTGTCGGCCAGGCGACTATGGCAGCGACGTGTCCCAT 1059416 Query 159712 CTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCT 159771 || || | || ||||| ||||| ||||||||||| |||||||||||||| | || || Sbjct 1059415 CTGAATCTGCACAAGACTTTCTGCATTCCACATGGCGGTGGAGGTCCTGGTATGGGCCCA 1059356 Query 159772 ATTGGTGT 159779 || ||||| Sbjct 1059355 ATCGGTGT 1059348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587951745840800