Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq359 156 9e-33
seq3603 141 2e-28
seq3289 132 1e-25
seq3378 127 5e-24
>seq359
Length=456481
Score = 156 bits (172), Expect = 9e-33
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || || || ||||| || | ||||| | |||||||| || ||
Sbjct 66095 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTG 66036
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || || ||||||||||| || || || |||||||| || ||
Sbjct 66035 CTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTT 65976
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| |||||||| || || || ||| ||||| || ||||| | |||||||| ||
Sbjct 65975 GGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGT 65916
Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142
||||||||||||||| | |||||||
Sbjct 65915 CAAAGTTTTTACGAAGATCTGCATTT 65890
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || || |||||||| || | ||||| | |||||||| || ||
Sbjct 66779 GTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTG 66720
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| || || || ||||||||||||||||| || |||||||| || ||
Sbjct 66719 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTT 66660
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||||||||| || || || ||| ||||| || || |||| |||||||| ||
Sbjct 66659 GGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGT 66600
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | |||||
Sbjct 66599 CAGGGTCTTCACGAAGATCTGCAT 66576
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || || |||||||| || | ||||| | |||||||| || ||
Sbjct 66323 GTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTG 66264
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || || ||||||||||| || || || |||||||| || ||
Sbjct 66263 CTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTT 66204
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||||||||| || || || ||| ||||| || || |||| |||||||| ||
Sbjct 66203 GGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGT 66144
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | |||||
Sbjct 66143 CAGGGTCTTCACGAAGATCTGCAT 66120
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || || || || || || |||||||| | | || | |||||||| || ||
Sbjct 66551 GTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTCCAGTTG 66492
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| || || || ||||||||||| || || || ||||| ||||| ||
Sbjct 66491 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGAATCTT 66432
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| |||||||||||||| || | ||||| || || |||| |||||||| ||
Sbjct 66431 GGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGT 66372
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | |||||
Sbjct 66371 CAGGGTCTTCACGAAGATCTGCAT 66348
>seq3603
Length=2672878
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | ||| ||||| |||||||| ||||| || | ||| || | ||||| || |||||
Sbjct 316334 GTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCCAGCTG 316275
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| || || || || ||||| ||||| |||||||||||||| |||||
Sbjct 316274 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 316215
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| ||||| |||||||| || || || || | ||| | ||||| || ||
Sbjct 316214 AGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGT 316155
Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142
| ||||| || || | ||||||||
Sbjct 316154 GAGGGTTTTCACAAAGATTTGCATTT 316129
>seq3289
Length=20206255
Score = 132 bits (146), Expect = 1e-25
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| |||||||| || |||||||| || | ||| || | |||||||| | |||||| ||
Sbjct 14369597 AGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAACTGCTTGCC 14369656
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
||||| || | || || || ||||||||||| ||||||||||| || || || ||
Sbjct 14369657 AGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 14369716
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
|| ||||| ||||| ||||| ||| || ||||| || | ||||| || || | ||
Sbjct 14369717 AACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGT 14369776
Query 195123 TTTTACGAACACTTGCAT 195140
|||||| || | ||||||
Sbjct 14369777 TTTTACAAAAATTTGCAT 14369794
>seq3378
Length=5191987
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|| ||| | ||| | ||||||||| || ||||| ||||| |||| | ||| | |||||
Sbjct 4218034 CAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATC 4217975
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
|| |||||||| || |||||||| | || || || ||||| ||||| || || |||||
Sbjct 4217974 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTC 4217915
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
|| || || ||| || ||||||||||| || || ||||| || | ||| | ||
Sbjct 4217914 CTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGT 4217855
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || ||||| || || ||||| | |||||
Sbjct 4217854 CTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822
Score = 122 bits (134), Expect = 2e-22
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||| || ||||| || ||||| || || || ||||| |||| |||| || | ||||| |
Sbjct 4217119 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCCT 4217061
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
| | |||||| || |||||||| | || || || ||||| |||||||| || ||||| |
Sbjct 4217060 CCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 4217001
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
| || || ||| || ||||||||||| || || ||||| || | ||| | ||||
Sbjct 4217000 GGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCT 4216941
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || ||||| || || ||||| | |||||
Sbjct 4216940 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910
Score = 122 bits (134), Expect = 2e-22
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||| || ||||| || ||||| || || || ||||| |||| |||| || | ||||| |
Sbjct 4217803 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCCT 4217745
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
| | |||||| || |||||||| | || || || ||||| |||||||| || ||||| |
Sbjct 4217744 CCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 4217685
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
| || || ||| || ||||||||||| || || ||||| || | ||| | ||||
Sbjct 4217684 GGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCT 4217625
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || ||||| || || ||||| | |||||
Sbjct 4217624 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | ||||||||| || || || ||||| |||| | ||| | ||||| || |||||
Sbjct 4216885 GTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTG 4216826
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || ||||| ||||| || || ||||| || || ||
Sbjct 4216825 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 4216766
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || ||||||||||| || || ||||| || | ||| | ||||| || ||
Sbjct 4216765 GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 4216706
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || || ||||| | |||||
Sbjct 4216705 CAAGGTCTTGACGAAGATCTGCAT 4216682
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | ||||||||| || || || ||||| |||| | ||| | ||||| || |||||
Sbjct 4217569 GTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTG 4217510
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || ||||| ||||| || || ||||| || || ||
Sbjct 4217509 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 4217450
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || ||||||||||| || || ||||| || | ||| | ||||| || ||
Sbjct 4217449 GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 4217390
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || || ||||| | |||||
Sbjct 4217389 CAAGGTCTTGACGAAGATCTGCAT 4217366
Score = 116 bits (128), Expect = 8e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||| || ||||| || ||||| || || || ||||| |||| |||| || | ||||| |
Sbjct 4217347 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCCT 4217289
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
| | |||||| || |||||||| | || || || ||||| ||||| || || ||||| |
Sbjct 4217288 CCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCT 4217229
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
| || || ||| || ||||||||||| || || ||||| || | ||| | ||||
Sbjct 4217228 GGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTCT 4217169
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || ||||| || || ||||| | |||||
Sbjct 4217168 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109289267897510
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