Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq359 156 9e-33 seq3603 141 2e-28 seq3289 132 1e-25 seq3378 127 5e-24 >seq359 Length=456481 Score = 156 bits (172), Expect = 9e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | ||||| | |||||||| || || Sbjct 66095 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTG 66036 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||||||||| || || || |||||||| || || Sbjct 66035 CTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTT 65976 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||| || || || ||| ||||| || ||||| | |||||||| || Sbjct 65975 GGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGT 65916 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 ||||||||||||||| | ||||||| Sbjct 65915 CAAAGTTTTTACGAAGATCTGCATTT 65890 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || |||||||| || | ||||| | |||||||| || || Sbjct 66779 GTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTG 66720 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || ||||||||||||||||| || |||||||| || || Sbjct 66719 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTT 66660 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || || || ||| ||||| || || |||| |||||||| || Sbjct 66659 GGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGT 66600 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 66599 CAGGGTCTTCACGAAGATCTGCAT 66576 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || |||||||| || | ||||| | |||||||| || || Sbjct 66323 GTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTG 66264 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||||||||| || || || |||||||| || || Sbjct 66263 CTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTT 66204 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || || || ||| ||||| || || |||| |||||||| || Sbjct 66203 GGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGT 66144 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 66143 CAGGGTCTTCACGAAGATCTGCAT 66120 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || || || || |||||||| | | || | |||||||| || || Sbjct 66551 GTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTCCAGTTG 66492 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || ||||||||||| || || || ||||| ||||| || Sbjct 66491 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGAATCTT 66432 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || | ||||| || || |||| |||||||| || Sbjct 66431 GGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGT 66372 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 66371 CAGGGTCTTCACGAAGATCTGCAT 66348 >seq3603 Length=2672878 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| ||||| |||||||| ||||| || | ||| || | ||||| || ||||| Sbjct 316334 GTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCCAGCTG 316275 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || || ||||| ||||| |||||||||||||| ||||| Sbjct 316274 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 316215 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||| || || || || | ||| | ||||| || || Sbjct 316214 AGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGT 316155 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || || | |||||||| Sbjct 316154 GAGGGTTTTCACAAAGATTTGCATTT 316129 >seq3289 Length=20206255 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| |||||||| || |||||||| || | ||| || | |||||||| | |||||| || Sbjct 14369597 AGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAACTGCTTGCC 14369656 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || || || ||||||||||| ||||||||||| || || || || Sbjct 14369657 AGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 14369716 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||| ||||| ||||| ||| || ||||| || | ||||| || || | || Sbjct 14369717 AACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGT 14369776 Query 195123 TTTTACGAACACTTGCAT 195140 |||||| || | |||||| Sbjct 14369777 TTTTACAAAAATTTGCAT 14369794 >seq3378 Length=5191987 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| | ||| | ||||||||| || ||||| ||||| |||| | ||| | ||||| Sbjct 4218034 CAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATC 4217975 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || |||||||| | || || || ||||| ||||| || || ||||| Sbjct 4217974 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTC 4217915 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| || ||||||||||| || || ||||| || | ||| | || Sbjct 4217914 CTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGT 4217855 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || ||||| | ||||| Sbjct 4217854 CTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822 Score = 122 bits (134), Expect = 2e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| || ||||| || ||||| || || || ||||| |||| |||| || | ||||| | Sbjct 4217119 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCCT 4217061 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | |||||| || |||||||| | || || || ||||| |||||||| || ||||| | Sbjct 4217060 CCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 4217001 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || ||| || ||||||||||| || || ||||| || | ||| | |||| Sbjct 4217000 GGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCT 4216941 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || || ||||| | ||||| Sbjct 4216940 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910 Score = 122 bits (134), Expect = 2e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| || ||||| || ||||| || || || ||||| |||| |||| || | ||||| | Sbjct 4217803 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCCT 4217745 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | |||||| || |||||||| | || || || ||||| |||||||| || ||||| | Sbjct 4217744 CCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 4217685 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || ||| || ||||||||||| || || ||||| || | ||| | |||| Sbjct 4217684 GGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCT 4217625 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || || ||||| | ||||| Sbjct 4217624 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || || || ||||| |||| | ||| | ||||| || ||||| Sbjct 4216885 GTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTG 4216826 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| ||||| || || ||||| || || || Sbjct 4216825 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 4216766 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||| || || ||||| || | ||| | ||||| || || Sbjct 4216765 GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 4216706 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 4216705 CAAGGTCTTGACGAAGATCTGCAT 4216682 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || || || ||||| |||| | ||| | ||||| || ||||| Sbjct 4217569 GTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTG 4217510 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| ||||| || || ||||| || || || Sbjct 4217509 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 4217450 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||| || || ||||| || | ||| | ||||| || || Sbjct 4217449 GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 4217390 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 4217389 CAAGGTCTTGACGAAGATCTGCAT 4217366 Score = 116 bits (128), Expect = 8e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| || ||||| || ||||| || || || ||||| |||| |||| || | ||||| | Sbjct 4217347 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCCT 4217289 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | |||||| || |||||||| | || || || ||||| ||||| || || ||||| | Sbjct 4217288 CCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCT 4217229 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || ||| || ||||||||||| || || ||||| || | ||| | |||| Sbjct 4217228 GGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTCT 4217169 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || || ||||| | ||||| Sbjct 4217168 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109289267897510