Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq359 113 3e-20 seq3603 107 1e-18 >seq359 Length=456481 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| ||||| ||||| || || || | | ||| |||| ||| Sbjct 66556 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTCC 66497 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || || || ||||||||| | || | ||||||||||| | Sbjct 66496 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGA 66437 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | |||| | ||| || || | || ||||| ||| Sbjct 66436 ATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTT 66377 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| |||||||||||| Sbjct 66376 CCCGTCAGGGTCTTCACGAAGATCTGCATA 66347 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| || || ||||| || || | || |||| ||| Sbjct 66784 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCC 66725 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || || || ||||||||| | || | ||||||||||| Sbjct 66724 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 66665 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || || | || ||||| ||| Sbjct 66664 ATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTT 66605 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| |||||||||||| Sbjct 66604 CCCGTCAGGGTCTTCACGAAGATCTGCATA 66575 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| || || ||||| || || | || |||| ||| Sbjct 66328 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCC 66269 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 66268 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 66209 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || || | || ||||| ||| Sbjct 66208 ATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTT 66149 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| |||||||||||| Sbjct 66148 CCCGTCAGGGTCTTCACGAAGATCTGCATA 66119 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | || |||| ||| Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | |||| || | ||| || || | ||| ||||| ||| Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| | ||| || || ||||||||||| || Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCATTTT 65889 >seq3603 Length=2672878 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || |||||||| |||||||||||| | || |||| ||| Sbjct 316339 ACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCC 316280 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||| ||| | || | || || ||||| Sbjct 316279 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGG 316220 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 316219 ATTTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 316162 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || ||||| || ||||||||||| ||||| ||| Sbjct 316161 TGCCGGTGAGGGTTTTCACAAAGATTTGCATTTTC 316127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324580068933840