Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq466 491 5e-134 seq3134 250 3e-61 >seq466 Length=100518 Score = 491 bits (544), Expect = 5e-134 Identities = 1222/1865 (66%), Gaps = 12/1865 (1%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||| | || | ||| |||| |||||| || | ||||||||| || Sbjct 43093 TTTGTCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCC 43034 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || | || |||| ||| || || || |||||||| ||| | || Sbjct 43033 TGTTTTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGG 42974 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | || ||||||||||| ||||||||| ||||||||||| || |||||||||||||| Sbjct 42973 CTCAGCAACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGC 42914 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | | | | || | |||||||||||| ||||| || | | || || Sbjct 42913 CATTTTAATAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTC 42854 Query 47213 TTCTGGGA--GATTAG-TATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 ||| || | |||| ||||||| |||||||||| | || | ||||||| ||||| | Sbjct 42853 TTCGGGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCAT 42794 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 |||| ||| | | | || ||||| || | ||||||||| |||| ||| Sbjct 42793 CTCATCATCCCACAAATCAAGCTCCGTTAAATCACGCAATAAATGAGGATTTACAACTTG 42734 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 ||| || || || | ||||| | |||| || || || || || || | || || Sbjct 42733 AAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACTC 42674 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||| || || | ||||| ||||| |||||||| ||||||| |||| || || || Sbjct 42673 ATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGTT 42614 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 ||| || || | | || ||| | | ||| ||||||||||||| ||| Sbjct 42613 TCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGG 42554 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 ||||| | |||||| || | || ||| || |||| ||| ||| |||| || Sbjct 42553 TGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATATAGGT 42494 Query 47570 TTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATAT 47629 || ||| || || | || | | ||||||||| |||||||| || | ||| || || Sbjct 42493 TTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAGTAAAT 42434 Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNN 47689 |||||||| |||| | || | | ||||||| |||| | ||| | Sbjct 42433 AGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAACCTCAT 42374 Query 47690 NNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATT 47749 |||| |||||| || ||||| |||||||||||||| || | || | ||| Sbjct 42373 CAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGTAAATT 42314 Query 47750 AGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNN 47809 || | || ||||| || ||||| | ||||||||| || |||||||| || Sbjct 42313 TGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATTCAGGTTTTT 42254 Query 47810 NNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATC---AAACTTGTTATTTATAAC 47866 | ||| | | ||| || || || | | || | | || Sbjct 42253 GGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCAC 42194 Query 47867 AAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATA 47926 |||| | || || ||||| ||||||| |||||||||||||| || | ||| | ||| Sbjct 42193 AAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTTCGTCTGGCGCTGAATA 42134 Query 47927 TTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATT 47986 | | ||||| | |||| ||||| || || ||||| || | |||||| ||||| | Sbjct 42133 CTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCT 42074 Query 47987 NNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTC 48046 ||||||| | ||| || ||||||| |||| || ||||| || | |||||||| Sbjct 42073 TTTTCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTC 42014 Query 48047 AATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAG-CTTTATTA--TCATG 48103 ||| || | ||||| || |||||| |||| || | || | || | Sbjct 42013 AATTATGGCAAACCAAAGAGATTGAGCCTT---AACAATTCGATTCTGTCGCCCCTCTTT 41957 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 ||| ||||| ||| || || |||||||| || || | |||| | | || || || Sbjct 41956 TTCATATTTGACATACAATTTTTCAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCA 41897 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 || | ||||||||||| ||||||||||| | || || | ||||||| | ||| Sbjct 41896 TTTGTGTGGACACATCAACGACCAATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATC 41837 Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 || ||||| | || ||||| ||||| || | |||| || || ||| |||| | Sbjct 41836 AGGAATCCACAAGGCATAAAATAGATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTT 41777 Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTAC 48343 |||||| || | ||| || | | || | |||||| || || | || || || | | | Sbjct 41776 TTTAAGGTCTAAAAATTCAAACACGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGC 41717 Query 48344 ACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA 48403 ||||||| |||| ||| || ||||| | ||| | || ||||||| | ||||| | Sbjct 41716 TCCTGGTCTTTTACCACCACCCTGATCGACATAGCGTGCCACATTGTTAAATACTCTAAG 41657 Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT 48463 |||||| || | |||||||| ||||||| || || |||||| | | || | |||| Sbjct 41656 CATTGGTACCAAGCCATTTGAAGTACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCG 41597 Query 48464 TATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523 ||| | || || ||| || || |||||| ||| || || | || ||| | | Sbjct 41596 AATACAATGAACATTAAGACCAATGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTC 41537 Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583 | || | | | |||||||| ||| ||| | ||| |||| |||||||| || Sbjct 41536 TACTGTTTTAAATATTCCTTCAATAGAATCCGATGCCATTGTTAAAAGAAAACATGATGA 41477 Query 48584 CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 | ||| ||| | || | | | ||| | ||||| |||||||| |||| | Sbjct 41476 TAATTGGGGACGGTTTGTGGCAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACG 41417 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 || |||| || |||||||||||||| ||||||| ||||| ||||||||| || Sbjct 41416 TTCCGATAGTAAATTATATGTTTCAATCGCAGAATCAATATCATCACCATGTATACCAAT 41357 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 | |||||||||| ||| | || |||| ||| | |||||| ||| ||||| | | Sbjct 41356 TGCGACACGCATTAGCATGTGCTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAA 41297 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT 48823 ||||||| || | ||| ||||| ||||| || || ||| ||| || ||||| ||| Sbjct 41296 ATATGATCGCTCAAGTGTCTTAAATCCAAAGTAATTATATCCAAAATCACGATCATAAAT 41237 Query 48824 AATTG 48828 |||| Sbjct 41236 TATTG 41232 >seq3134 Length=2474545 Score = 250 bits (276), Expect = 3e-61 Identities = 562/837 (67%), Gaps = 8/837 (1%) Strand=Plus/Minus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || |||||| ||||||||| | ||| |||| ||||||||||| ||||| || || || Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 || || |||||| || ||| ||||| ||| || || | ||| || || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATT 18840 || | || || | ||| || ||||| | ||||||| | ||| | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 18841 CCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900 || || || || || || ||||| || |||||||| || ||||| || | || || || Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 18901 GATATAATAGATACAA--CTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCA 18958 || || || | | | || ||| || ||| | | | | ||| | ||||||| Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAACATCA 573904 Query 18959 A-ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 ||| ||||| || ||||| ||||||||||| | |||| ||| || || || || Sbjct 573903 GGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTG 573845 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 | || ||||| || || | || || | ||| || ||||||||||| || |||| Sbjct 573844 AGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAG 573785 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 || || || || || || ||||| || | | | || ||| | |||| | ||| | Sbjct 573784 AAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAG-A 573726 Query 19138 TGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 || ||||| || ||||| || |||||| || || |||||||| || || | Sbjct 573725 GGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGC 573666 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 |||||||||||| ||||| || | ||| | ||||| || |||| | ||||| Sbjct 573665 ATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTA 573606 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||||| || || | ||| || || || |||||||| || || || || | || ||||| Sbjct 573605 CATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGT 573546 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 ||||| ||||| | ||| | ||||||| ||| || ||||| || ||||| || Sbjct 573545 AATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGC 573486 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436 |||||||| || | |||||| ||| ||||| || | |||| ||| Sbjct 573485 GGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCA 573426 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| | | ||| ||||| | ||| ||||| || || ||||| || || ||||| || Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562013733349200