Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3383 214 1e-49 seq3169 96.9 3e-14 >seq3383 Length=19223366 Score = 214 bits (236), Expect = 1e-49 Identities = 383/551 (70%), Gaps = 10/551 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||||| || || || || ||| || ||||| | || |||| || Sbjct 7899055 AGCTGTTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAA 7898996 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||| || |||||||| ||||| ||||| | || || ||||| |||||| | ||||| Sbjct 7898995 GGTTGAGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCCTATGTTGCCTTCAC 7898936 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTAC 550167 ||| || || | ||| |||||||||| || || | || | ||| || ||||| || Sbjct 7898935 GGAGACGGAGCGTTTGATTGGTGATGCCGCCAAGAACCAGGTGGCCA-TG--AATCCAAC 7898879 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 | || || ||||||||||| ||| | ||||| | | || ||||| || | || || Sbjct 7898878 TCAAACGATCTTTGATGCTAAGCGTCTTATTGGTCGCAAATTCGATGATGCGGCCGTGCA 7898819 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | || |||||||| ||||| ||| | | |||| ||| ||| || || | ||||| Sbjct 7898818 ATCCGACATGAAGCACTGGCCCTTCGAGGTCGTTAGCGTTGATGGCAAGCCCAAGATTGA 7898759 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 || ||| | |||||| | || | ||| | || || | || || || ||||| | Sbjct 7898758 AGTTACGTA-CAAGGATGAGAAGAAGACTTTCTTCCCCGAGGAGATCTCCTCCATGGTGT 7898700 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTA 550405 | | |||||||| | || ||| | | | ||| ||||| ||||| |||| || Sbjct 7898699 TGACCAAAATGAAGGAGACCGCC-GAGGCGTACCTGGGCAAGACGGTTACCAATGCCGTC 7898641 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || ||||| || || ||||| || |||||||| ||||| || ||||| |||||||| Sbjct 7898640 ATCACTGTGCCTGCCTATTTCAACGACTCACAGCGTCAGGCGACTAAGGATGCTGGTACC 7898581 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || || || | || || | |||||||| || || || ||||| || || |||| ||| Sbjct 7898580 ATCGCCGGTTTGAACGTATTGCGTATTATTAACGAGCCAACTGCCGCGGCCATTGCCTAT 7898521 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 7898520 GGTCTGGACAA 7898510 >seq3169 Length=10161210 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || || || || |||||||| ||||| ||||| ||||| || |||||||| Sbjct 3947216 GGATGCGGTTATCACAGTGCCGGCATATTTCAATGATTCACAGCGTCAGGCCACTAAAGA 3947157 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || || || || | ||||| || || || |||||||| || || ||||| || Sbjct 3947156 TGCCGGCTCCATAGCCGGTTTGAATGTGCTCCGAATCATCAATGAGCCGACGGCTGCCGC 3947097 Query 550516 ACTTGCATATGGACTTGATAA 550536 || || ||||| || || || Sbjct 3947096 CCTAGCCTATGGCCTGGACAA 3947076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028580472579700