Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3134 89.7 6e-13 >seq3134 Length=2474545 Score = 89.7 bits (98), Expect = 6e-13 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 37445 TATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTG 37504 |||||| || ||||| || | || |||||||| ||||| | ||| || || |||||||| Sbjct 573632 TATATATGTGTCAATCAGGACGCTGTACATTTCCGAGTGGACATTCTCCATGGCTATCTG 573573 Query 37505 AAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTA 37563 ||| ||||| || || | ||| || | |||| ||||| || | ||| | || | | Sbjct 573572 AAAGCCATAGAAGCAACGAGCCTCTG-TAATCTGAACTTCCTGGCTAAAACGCTCGACCA 573514 Query 37564 AGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 || || ||||| || ||||| || ||||| || || ||||||| | || |||| Sbjct 573513 GATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGGCCAGAACATGTGAAATGAAAT 573454 Query 37624 GTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCAT 37683 | | || | | || || | ||| ||| | | ||| || || | ||| ||||| | Sbjct 573453 GACGCTCGTTGTCTGTTAGGCGTGCCCAGTCAGTCAGATCCTTAGACAGATCCACTTCCT 573394 Query 37684 CAACGGTCCAAAA 37696 | || ||||| || Sbjct 573393 CCACAGTCCAGAA 573381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592216624421200