Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3134 134 1e-26 seq3289 125 6e-24 seq3378 107 2e-18 seq359 98.7 8e-16 >seq3134 Length=2474545 Score = 134 bits (148), Expect = 1e-26 Identities = 206/289 (71%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 13649 ATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGT 13708 |||| || || || ||||| || | | | ||||||| ||||| || ||| |||| Sbjct 1232084 ATATCAAACTTGCGCTTACAGCCCTGATAGTTCATGTAGCGTATCTTGCCAAAGATGTCG 1232143 Query 13709 CGCTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCG 13768 |||||| ||||| | | |||||| |||| ||| ||||||||||| || |||| || Sbjct 1232144 CGCTCCTTCCAGCCTTGGTCGTGAACACCGCCTATGGACCACATGCAGCCCACATAGCCA 1232203 Query 13769 TTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT--AAAG 13826 |||||||||||||| |||| ||||| |||||||| | |||| || ||| || | Sbjct 1232204 TTGGGATCGCGTCCGTCCAGGCTGTACTTGTCGTTCAGCAGTATGCTGT--ATTCCAATG 1232261 Query 13827 CCA-CTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATAT 13885 ||| || | |||| | ||| || ||||| ||||| ||||| || || | || | || Sbjct 1232262 CCAGCTCT-GGCGTTTCCGTCCACTCCAATATCTTTTTGGCCCAGTACATGCGCAGAAAT 1232320 Query 13886 CCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 || ||||||||||| | | | ||||| ||| || | |||||||| Sbjct 1232321 CCATGCATTTTGCCCTCCTTCACCAGCTGCAGCTGTGCCGAGTTCCACA 1232369 >seq3289 Length=20206255 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||||| ||||| || |||||||| || | | || | |||| ||| Sbjct 14369586 ACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCC 14369645 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || || |||||||| ||||| || ||||| |||||||| || || Sbjct 14369646 AACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14369705 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | || || |||| ||| || |||||||||| || || Sbjct 14369706 ATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 14369765 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || | ||||||||||| || ||||| || Sbjct 14369766 CCCGTGAGGGTTTTTACAAAAATTTGCATCGT 14369797 >seq3378 Length=5191987 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||||||| || || || || || ||||| |||| | || | | Sbjct 4217125 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 4217066 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 4217065 ATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 4217006 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||||| || | |||| Sbjct 4217005 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4216946 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || ||||||||| Sbjct 4216945 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4216909 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||||||| || || || || || ||||| |||| | || | | Sbjct 4217809 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 4217750 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 4217749 ATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 4217690 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||||| || | |||| Sbjct 4217689 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4217630 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || ||||||||| Sbjct 4217629 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217593 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||||||| || || || || || ||||| |||| | || | | Sbjct 4217353 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 4217294 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || || || ||||||||||| ||||| || ||||| || || || Sbjct 4217293 ATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTT 4217234 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||||| || | |||| Sbjct 4217233 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4217174 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || ||||||||| Sbjct 4217173 AGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || | || || || || || || ||||| |||| | ||| | | Sbjct 4218037 ACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCC 4217978 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || || || ||||||||||| ||||| || ||||| || || || Sbjct 4217977 ATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTT 4217918 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||||| || | |||| Sbjct 4217917 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4217858 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || ||||||||| Sbjct 4217857 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || ||||| |||| | ||| | |||| |||| ||||| || Sbjct 4217562 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCG 4217503 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || ||||||||||| ||||| || ||||| || || || || || || || || Sbjct 4217502 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4217443 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | || || || | ||||| || | |||| || ||||| || || || Sbjct 4217442 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4217383 Query 101453 TTTACAAATATCTGCATG 101470 || || || ||||||||| Sbjct 4217382 TTGACGAAGATCTGCATG 4217365 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || ||||| |||| | ||| | |||| |||| ||||| || Sbjct 4216878 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTTCCG 4216819 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || ||||||||||| ||||| || ||||| || || || || || || || || Sbjct 4216818 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4216759 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | || || || | ||||| || | |||| || ||||| || || || Sbjct 4216758 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4216699 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 4216698 TTGACGAAGATCTGCAT 4216682 >seq359 Length=456481 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||| || | || ||| | |||| ||| Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || |||| |||||| || || || || || || || || ||||| Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | ||||| || || |||| || || Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||||||||| || |||||||| Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCAT 65892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396213054930210