Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 134 1e-26
seq3289 125 6e-24
seq3378 107 2e-18
seq359 98.7 8e-16
>seq3134
Length=2474545
Score = 134 bits (148), Expect = 1e-26
Identities = 206/289 (71%), Gaps = 6/289 (2%)
Strand=Plus/Plus
Query 13649 ATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGT 13708
|||| || || || ||||| || | | | ||||||| ||||| || ||| ||||
Sbjct 1232084 ATATCAAACTTGCGCTTACAGCCCTGATAGTTCATGTAGCGTATCTTGCCAAAGATGTCG 1232143
Query 13709 CGCTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCG 13768
|||||| ||||| | | |||||| |||| ||| ||||||||||| || |||| ||
Sbjct 1232144 CGCTCCTTCCAGCCTTGGTCGTGAACACCGCCTATGGACCACATGCAGCCCACATAGCCA 1232203
Query 13769 TTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT--AAAG 13826
|||||||||||||| |||| ||||| |||||||| | |||| || ||| || |
Sbjct 1232204 TTGGGATCGCGTCCGTCCAGGCTGTACTTGTCGTTCAGCAGTATGCTGT--ATTCCAATG 1232261
Query 13827 CCA-CTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATAT 13885
||| || | |||| | ||| || ||||| ||||| ||||| || || | || | ||
Sbjct 1232262 CCAGCTCT-GGCGTTTCCGTCCACTCCAATATCTTTTTGGCCCAGTACATGCGCAGAAAT 1232320
Query 13886 CCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934
|| ||||||||||| | | | ||||| ||| || | ||||||||
Sbjct 1232321 CCATGCATTTTGCCCTCCTTCACCAGCTGCAGCTGTGCCGAGTTCCACA 1232369
>seq3289
Length=20206255
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | ||||| ||||| || |||||||| || | | || | |||| |||
Sbjct 14369586 ACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCC 14369645
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| || || || || |||||||| ||||| || ||||| |||||||| || ||
Sbjct 14369646 AACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14369705
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| | || | || || |||| ||| || |||||||||| || ||
Sbjct 14369706 ATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 14369765
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
|| || | ||||||||||| || ||||| ||
Sbjct 14369766 CCCGTGAGGGTTTTTACAAAAATTTGCATCGT 14369797
>seq3378
Length=5191987
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||||||| || || || || || ||||| |||| | || | |
Sbjct 4217125 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 4217066
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| ||||| ||||| || || || ||||||||||| ||||| || |||||||| || ||
Sbjct 4217065 ATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 4217006
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| || || || || ||| | || | || || || | ||||| || | ||||
Sbjct 4217005 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4216946
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || || || || || || |||||||||
Sbjct 4216945 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4216909
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||||||| || || || || || ||||| |||| | || | |
Sbjct 4217809 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 4217750
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| ||||| ||||| || || || ||||||||||| ||||| || |||||||| || ||
Sbjct 4217749 ATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 4217690
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| || || || || ||| | || | || || || | ||||| || | ||||
Sbjct 4217689 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4217630
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || || || || || || |||||||||
Sbjct 4217629 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217593
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||||||| || || || || || ||||| |||| | || | |
Sbjct 4217353 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 4217294
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| ||||| ||||| || || || ||||||||||| ||||| || ||||| || || ||
Sbjct 4217293 ATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTT 4217234
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| || || || || ||| | || | || || || | ||||| || | ||||
Sbjct 4217233 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4217174
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || || || || || || |||||||||
Sbjct 4217173 AGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217137
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| || || | || || || || || || ||||| |||| | ||| | |
Sbjct 4218037 ACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCC 4217978
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||| ||||| || || || ||||||||||| ||||| || ||||| || || ||
Sbjct 4217977 ATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTT 4217918
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| || || || || ||| | || | || || || | ||||| || | ||||
Sbjct 4217917 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 4217858
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || || || || || || |||||||||
Sbjct 4217857 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821
Score = 87.8 bits (96), Expect = 1e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| || || || || || ||||| |||| | ||| | |||| |||| ||||| ||
Sbjct 4217562 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCG 4217503
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
|| || ||||||||||| ||||| || ||||| || || || || || || || ||
Sbjct 4217502 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4217443
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
||| | || | || || || | ||||| || | |||| || ||||| || || ||
Sbjct 4217442 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4217383
Query 101453 TTTACAAATATCTGCATG 101470
|| || || |||||||||
Sbjct 4217382 TTGACGAAGATCTGCATG 4217365
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| || || || || || ||||| |||| | ||| | |||| |||| ||||| ||
Sbjct 4216878 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTTCCG 4216819
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
|| || ||||||||||| ||||| || ||||| || || || || || || || ||
Sbjct 4216818 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4216759
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
||| | || | || || || | ||||| || | |||| || ||||| || || ||
Sbjct 4216758 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4216699
Query 101453 TTTACAAATATCTGCAT 101469
|| || || ||||||||
Sbjct 4216698 TTGACGAAGATCTGCAT 4216682
>seq359
Length=456481
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| || || || || || ||||| || | || ||| | |||| |||
Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||| || || || |||| |||||| || || || || || || || || |||||
Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | || || || | ||||| || || |||| || ||
Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || ||||||||||| || ||||||||
Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCAT 65892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396213054930210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |