Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3289 134 1e-26 seq359 114 1e-20 seq3378 98.7 8e-16 >seq3289 Length=20206255 Score = 134 bits (148), Expect = 1e-26 Identities = 200/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 9082 TCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGA 9141 || ||||| ||||||||||| | || || || || ||||||||||||| |||||| Sbjct 8052268 TCGCAAATGAATTGAGCAATGCGATCACCGCGCTTGACCTCAAAGTCTGTGTCCGAATGA 8052327 Query 9142 TTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACG 9201 || |||| || || |||| || || | |||||||||||| | || ||||| |||||| Sbjct 8052328 TTAAACAAGACAACACCCAGATTGCCTCGGTAATCCTCATCAACAACGCCAGCGCCCACG 8052387 Query 9202 TCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCACC 9261 |||||||||| ||| || || || || || || ||||| | || || ||| | ||| | Sbjct 8052388 TCGATGAAGTTCTTCACGGCCAGGCCGGAACGAGGCGCCACTCTGCCATAGGAACCCTCT 8052447 Query 9262 GGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCCGTGTTTTGGAATCACGGTG 9321 || | || ||| | | |||||| |||| | |||| || | ||||| | | | Sbjct 8052448 GGCACCTGAACCTGGAGATCGGTCTTGACAATAGCCTTACCACGGGCTGGAACTATGAGG 8052507 Query 9322 TCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGTCCGATCC 9365 |||||| |||| | ||||| || || || | || ||||| Sbjct 8052508 TCGTAGGCGCTGCGCAAGTCAAAGCCGGCGGCTCGTTCAGATCC 8052551 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| ||||| | || ||||| || || ||||| | || || || || ||||| Sbjct 8051773 GGATAGAAGATGCGCTCGCAAATGAACTGTGCAATGCGATCTCCGCGCTTGACCTCAAAG 8051832 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 |||||||| |||||||| |||| || || |||| |||||| | ||| ||||| || | Sbjct 8051833 TCTGTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCACGGTAGTCCTCGTCAACA 8051892 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 || || |||||||||||||| |||| || || || || || || ||||| || | || | Sbjct 8051893 ACTCCGGCACCCACGTCGATAAAGTTTTTCACGGCCAGACCGGAACGGGGGGCCACTCTA 8051952 Query 9247 CCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 || ||| | ||| | || | |||||| | | || ||| | || | ||||||| Sbjct 8051953 CCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGTCTTCACAATAGCCTTGCC 8052008 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||||||| | || |||||| || |||||||| |||| Sbjct 14369566 CGCCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAG 14369625 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | ||| | || ||||||||||| || || || || | ||||| ||||| | | Sbjct 14369626 AAAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAG 14369685 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || || ||||| ||||| ||| ||| | | | || |||| || | Sbjct 14369686 GAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGA 14369745 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||| | || || || || ||||| | |||||||||||||| |||||||| Sbjct 14369746 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCATCGT 14369797 >seq359 Length=456481 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || |||||||| ||||| ||| | ||| Sbjct 66793 AGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGA 66734 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| |||||||| ||||| ||||| || || | |||| ||||||| Sbjct 66733 CCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCC 66674 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 66673 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTA 66614 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||| || || || || |||||||| Sbjct 66613 ATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| ||||| ||| | ||| | || ||| Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| ||||| || ||||| ||||| || || | || | ||||||||||| Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | ||||||||||| || || || ||| Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||||||||| || |||||||| Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCAT 65892 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || |||||||| ||||| ||| | ||| | || ||| Sbjct 66328 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCC 66269 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| ||||| || ||||| ||||| || || | || | ||||||||||| Sbjct 66268 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 66209 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | ||||||||||| ||||| || ||| Sbjct 66208 ATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTT 66149 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || || || |||||||| Sbjct 66148 CCCGTCAGGGTCTTCACGAAGATCTGCAT 66120 >seq3378 Length=5191987 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||| || | ||| ||| || ||||| ||||| || || Sbjct 4218048 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4217989 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| |||||| ||||| || |||| ||||| ||||| | |||| Sbjct 4217988 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217929 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || | ||||||| Sbjct 4217928 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 4217869 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || ||||| || || || || |||||||| Sbjct 4217868 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | ||| ||| || || || ||||| || || | | | || Sbjct 4216899 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 4216840 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || |||| ||||| ||||| | ||||| |||||| Sbjct 4216839 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCC 4216780 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 4216779 TTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTG 4216720 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || |||||||| Sbjct 4216719 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | ||| ||| || || || ||||| || || | | | || Sbjct 4217583 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 4217524 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || |||| ||||| ||||| | ||||| |||||| Sbjct 4217523 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCC 4217464 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 4217463 TTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTG 4217404 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || |||||||| Sbjct 4217403 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217366 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || | | || | || ||| Sbjct 4217118 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCC 4217059 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || |||| ||||| ||||| | ||||| |||||||||||| Sbjct 4217058 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 4216999 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || || Sbjct 4216998 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 4216939 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 4216938 CCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || | | || | || ||| Sbjct 4217802 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCC 4217743 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || |||| ||||| ||||| | ||||| |||||||||||| Sbjct 4217742 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 4217683 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || || Sbjct 4217682 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 4217623 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 4217622 CCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || | | || | || ||| Sbjct 4217346 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCC 4217287 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || |||| ||||| ||||| | ||||| ||||||||||| Sbjct 4217286 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 4217227 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || || Sbjct 4217226 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTCTTG 4217167 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 4217166 CCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380874784580190