Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3134 176 8e-39 seq466 86.0 1e-11 >seq3134 Length=2474545 Score = 176 bits (194), Expect = 8e-39 Identities = 548/831 (66%), Gaps = 27/831 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || |||||| | ||||||||||| || || || || |||||||| || | || Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTC---CAG 47955 |||||| || || || |||||| |||| || | |||| |||| ||| Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTT-TGCCGACCCCAA--GTTCAACCAG 574074 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 ||| |||| || || |||| || |||| ||||| || | | |||||||| || | Sbjct 574073 CAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAA 574014 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 || |||| || | || |||||||||| || || || || || | || Sbjct 574013 ATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGAT 573954 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAGG 48134 || | | ||| ||||| || | ||| | | |||| | | | || | | Sbjct 573953 CTCAATGATGCGCT-CTCTGCAGGGACGCTGCACCAAATGCTGGA---ACATCAGGACAG 573898 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | |||| || ||||| ||| ||| || |||| ||||| ||| || | Sbjct 573897 CAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGG 573838 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || || ||||| || || | || || ||| |||||||||| Sbjct 573837 GCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGC 573778 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || || || ||| ||| | ||| || || ||| ||| || |||| Sbjct 573777 CCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCC 573718 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGA-TGCATGGCATCGTCTCTATGGCCCGGAAG 48373 | |||||||||||||| |||||| ||| | ||| ||||| || || || || || Sbjct 573717 AAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCC-GGCATTGTTTCAATTGCATTAAAT 573659 Query 48374 AGCTTCTTGCACTCACCTGCGTC-CGCA-ACATAGGT---AGTGAGCA-GCTTTGCGTAC 48427 || | | | || | |||| ||| | ||| || | | || | ||| |||| Sbjct 573658 AGATAATCACGCTGA--TGCGGATCGCGTATATATGTGTCAATCAGGACGCT----GTAC 573605 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 || || ||||| |||||||| || || ||||| || || |||||| | ||||| Sbjct 573604 ATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTA 573545 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||| ||||| | || | ||| | ||||||||| || || || ||||| || || Sbjct 573544 ATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCG 573485 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 ||||| ||||| || |||||| || |||||| |||||||||| || || || | || Sbjct 573484 GCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAG-GCGTGCCCA 573426 Query 48608 CCCTGTACG-TCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | || | || || ||| |||||||| |||||||||||||| || || Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGC 573375 >seq466 Length=100518 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA--GTTTGAAG 212961 ||||| || || | || || ||||| || | || || ||| ||| || |||||||| Sbjct 42750 TGAGGATTTACAACTTGAAACTCACCGGACAATAC--TCGTCTTGTATAAATGTTTGAAG 42693 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 |||||||||||| ||| ||||| |||| || || |||||| ||||||||||||| Sbjct 42692 TGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGG 42633 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCT 213054 |||| | || | | ||| || || ||||||| Sbjct 42632 GAGCAATTAGCAAAGAGTTTCTAACACCGTGCT 42600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931375254515200