Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 176 8e-39
seq466 86.0 1e-11
>seq3134
Length=2474545
Score = 176 bits (194), Expect = 8e-39
Identities = 548/831 (66%), Gaps = 27/831 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || |||||| | ||||||||||| || || || || |||||||| || | ||
Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTC---CAG 47955
|||||| || || || |||||| |||| || | |||| |||| |||
Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTT-TGCCGACCCCAA--GTTCAACCAG 574074
Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
||| |||| || || |||| || |||| ||||| || | | |||||||| || |
Sbjct 574073 CAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAA 574014
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
|| |||| || | || |||||||||| || || || || || | ||
Sbjct 574013 ATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGAT 573954
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAGG 48134
|| | | ||| ||||| || | ||| | | |||| | | | || | |
Sbjct 573953 CTCAATGATGCGCT-CTCTGCAGGGACGCTGCACCAAATGCTGGA---ACATCAGGACAG 573898
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
||||||| | |||| || ||||| ||| ||| || |||| ||||| ||| || |
Sbjct 573897 CAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGG 573838
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||| | || | || || ||||| || || | || || ||| ||||||||||
Sbjct 573837 GCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGC 573778
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
|||| || || || || ||| ||| | ||| || || ||| ||| || ||||
Sbjct 573777 CCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCC 573718
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGA-TGCATGGCATCGTCTCTATGGCCCGGAAG 48373
| |||||||||||||| |||||| ||| | ||| ||||| || || || || ||
Sbjct 573717 AAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCC-GGCATTGTTTCAATTGCATTAAAT 573659
Query 48374 AGCTTCTTGCACTCACCTGCGTC-CGCA-ACATAGGT---AGTGAGCA-GCTTTGCGTAC 48427
|| | | | || | |||| ||| | ||| || | | || | ||| ||||
Sbjct 573658 AGATAATCACGCTGA--TGCGGATCGCGTATATATGTGTCAATCAGGACGCT----GTAC 573605
Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487
|| || ||||| |||||||| || || ||||| || || |||||| | |||||
Sbjct 573604 ATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTA 573545
Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547
| ||| ||||| | || | ||| | ||||||||| || || || ||||| || ||
Sbjct 573544 ATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCG 573485
Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607
||||| ||||| || |||||| || |||||| |||||||||| || || || | ||
Sbjct 573484 GCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAG-GCGTGCCCA 573426
Query 48608 CCCTGTACG-TCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
| || | || || ||| |||||||| |||||||||||||| || ||
Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGC 573375
>seq466
Length=100518
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/153 (73%), Gaps = 4/153 (3%)
Strand=Plus/Minus
Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA--GTTTGAAG 212961
||||| || || | || || ||||| || | || || ||| ||| || ||||||||
Sbjct 42750 TGAGGATTTACAACTTGAAACTCACCGGACAATAC--TCGTCTTGTATAAATGTTTGAAG 42693
Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021
|||||||||||| ||| ||||| |||| || || |||||| |||||||||||||
Sbjct 42692 TGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGG 42633
Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCT 213054
|||| | || | | ||| || || |||||||
Sbjct 42632 GAGCAATTAGCAAAGAGTTTCTAACACCGTGCT 42600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931375254515200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |