Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3134 138 2e-27 seq466 91.5 3e-13 >seq3134 Length=2474545 Score = 138 bits (152), Expect = 2e-27 Identities = 480/736 (65%), Gaps = 33/736 (4%) Strand=Plus/Plus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| || ||||| ||||| ||||| || || |||||||||||| |||| | || | | Sbjct 573472 TGGCCTTTTTTGCCGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGCC 573531 Query 25661 GGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 |||||| ||| ||| ||||| || ||||| || || ||||| ||||| || || Sbjct 573532 AGGAAGTTCAGATTACA--GAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGAA 573589 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GACGTACATTACAGACGTCG--CCG- 25774 ||| ||||| || |||| || | ||||| ||| |||| | | ||| || ||| Sbjct 573590 TGTCCACTCGGAAATGTA---CAGCGTCCTGATTGAC--ACAT-ATATACG-CGATCCGC 573642 Query 25775 ---AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCG 25830 || | ||| || ||| ||| || || ||| || ||| | ||| ||||||| Sbjct 573643 ATCAGCGTGATTATCTATTTAATGCAATTGAA-ACAATGCCGGCAGTTAAGCGGAAGGCC 573701 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| | ||||| | | | | || |||| ||||| ||||| | | || Sbjct 573702 GACTGGGCGCTTTCTTGGAT-ATCCTCTAAGGCAGCTAACTTTGGGGAGCGCATCATCGC 573760 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||||||||| ||||||||||| || ||||| ||||| | ||||| ||||| || Sbjct 573761 ATTTGCTGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAA 573820 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || || |||||||| || ||||| || ||||| || ||| | | ||||||| Sbjct 573821 GAAGCGTGGCCTTATGCCCGGCCT-CACTTTCTCGAACGAACTGATCTCCCGCGACGAGG 573879 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 | || || | || ||||| |||| | | | | || ||| | || || || Sbjct 573880 GACTGCATTGCGACTTTGCTGTCCTGATGTTCCAG---CATTTGGTGCAGCGTCC--CTG 573934 Query 26069 AAGAGACCG--TC-TACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 ||||| || || | || |||||| || ||||| || || ||||||||| Sbjct 573935 CAGAGAGCGCATCATTGAG-ATCATCTCCGATGCTGTTACCATTGAACAGGAGTTTCTTA 573993 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | |||||||| | ||| ||| | |||| |||| Sbjct 573994 CTGACGCACTGCCGGTCAATTTGATCGGCATGAATTGCGCACTTATGTCCGAATATATTG 574053 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 ||| ||||||||| | ||||||| | || || ||| || ||| |||| || | Sbjct 574054 AGTTTGTGGCCGATCGTCTGCTGGTTGAACTTGGGGTCGGCAAACTGTACAACACAAAGA 574113 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 | ||||| || ||||||| || |||||||| || || ||||| |||||||| || | Sbjct 574114 ATCCGTTTACATTCATGGAAATGATTTCGTTGGACGGCAAAACCAATTTCTTTGAGAAAA 574173 Query 26306 GGGTCGGCGACTATCA 26321 || ||||| ||||| Sbjct 574174 AAGTGGGCGAATATCA 574189 >seq466 Length=100518 Score = 91.5 bits (100), Expect = 3e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 ||||| | |||||| | | || | ||| || || || || |||||||||| | Sbjct 41934 TCAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGAC 41875 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 || | || |||| ||| |||| || ||| ||||| || || ||||||| || | ||| Sbjct 41874 CAATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAAT 41815 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 ||||| | | ||| || ||||| || | ||||| | || || ||||| ||||| Sbjct 41814 AGATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAAC 41755 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 | ||| | ||||| |||||||| || | || | || || |||| || |||||| Sbjct 41754 ACGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCC 41695 Query 222194 TGATCCAC 222201 ||||| || Sbjct 41694 TGATCGAC 41687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928687709123200