Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3383 212 4e-49
seq3169 109 4e-18
seq3289 93.3 3e-13
seq3313 86.0 4e-11
>seq3383
Length=19223366
Score = 212 bits (234), Expect = 4e-49
Identities = 381/548 (70%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
||||||||||||| || || || ||| ||| || | ||| | || |||| || || |
Sbjct 7899050 TTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAGGTTG 7898991
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || |||||||| || || |||||| | || || ||||| |||||| | || || || |
Sbjct 7898990 AGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCCTATGTTGCCTTCACGGAGA 7898931
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || | | | ||||| ||||| || || | || | || ||||| | | || |
Sbjct 7898930 CGGAGCGTTTGATTGGTGATGCCGCCAAGAACCAGGTGGCCATGAATCCAACTCAAACGA 7898871
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
| ||||||||||| | | |||||||| || || |||||| | | || ||||| || |
Sbjct 7898870 TCTTTGATGCTAAGCGTCTTATTGGTCGCAAATTCGATGATGCGGCCGTGCAATCCGACA 7898811
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630
|| || ||||| || |||| | | |||| ||| || || | || |||| | |
Sbjct 7898810 TGAAGCACTGGCCCTTCGAGGTCGTTAGCGTTGATGGCAAGCCCAAGATTGAAGTTACGT 7898751
Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690
||| | | | | || | || | ||| || || | || || || ||||| || ||||
Sbjct 7898750 ACAAGGATGAG-AAGAAGACTTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 7898693
Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748
|||||| | |||| |||| | || | ||| ||||| || || |||| || || |||
Sbjct 7898692 AATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACGGTTACCAATGCCGTCATCACT 7898635
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| || || ||||| || || || || ||||| || ||||| ||||| || | || ||
Sbjct 7898634 GTGCCTGCCTATTTCAACGACTCACAGCGTCAGGCGACTAAGGATGCTGGTACCATCGCC 7898575
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||| | || || || ||||||||||| || ||||| || || || |||| ||||||||
Sbjct 7898574 GGTTTGAACGTATTGCGTATTATTAACGAGCCAACTGCCGCGGCCATTGCCTATGGTCTG 7898515
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 7898514 GACAAGAA 7898507
>seq3169
Length=10161210
Score = 109 bits (120), Expect = 4e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|||||||| || ||| | || || || || || || | ||| ||||| || ||||
Sbjct 3948222 GCAATTGGCATCGATCTGGGCACAACCTATTCCTGCGTGGGTGTCTGGCAGAACAATAAA 3948163
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| ||||| ||||||||||| || || ||| | ||||| ||||| ||||| | |||| |
Sbjct 3948162 GTGGAAATTATTGCCAATGATCAGGGCAATCGCACAACGCCATCGTATGTGGCCTTTAAT 3948103
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486
||||| |||| |||||||| ||||| ||||| ||||
Sbjct 3948102 GAAACGGAACGCCTTATTGGCGATGCCGCTAAGAATCA 3948065
Score = 105 bits (116), Expect = 4e-17
Identities = 253/376 (67%), Gaps = 10/376 (3%)
Strand=Plus/Minus
Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565
||||| |||| ||||| || | || ||||| || || || ||||| | | ||
Sbjct 3947443 AATACGGTTTTCGATGCGAAGCGTTTAATTGGACGCAAGTTCGATGACCGTAAGATACAG 3947384
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625
||| || |||||||| || |||||||| || | ||| || || ||| | || ||
Sbjct 3947383 GAGGATCTGAAACATTGGCCCTTCAAGGTGATCAACGATGGGGGCAAGCCAAAAATTGAG 3947324
Query 474626 GC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| | | || ||||||| ||| | ||| | || || | | || ||||| |
Sbjct 3947323 GTCGAGTTCAA--AGGTGAACGTAAGCGTTTTGCCCCCGAGGAGGTCAGCTCTATGGTAT 3947266
Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA--CAAGAAGTAACTGATGCAG 474740
| |||| ||| ||| ||| ||| | ||||| || |||| || | ||||| |
Sbjct 3947265 TGACCAAGATGCGTGAAATCGCCGAGGTT-TATCTGGGCGGCAAG--GTGAAGGATGCGG 3947209
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| || || || || |||||||| |||||||| || ||||| || ||||||||||| ||
Sbjct 3947208 TTATCACAGTGCCGGCATATTTCAATGATTCACAGCGTCAGGCCACTAAAGATGCCGGCT 3947149
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
|| || ||| | ||||| | || || || ||||| || || || ||||| || || |
Sbjct 3947148 CCATAGCCGGTTTGAATGTGCTCCGAATCATCAATGAGCCGACGGCTGCCGCCCTAGCCT 3947089
Query 474861 ATGGTCTTGATAAGAA 474876
|||| || || |||||
Sbjct 3947088 ATGGCCTGGACAAGAA 3947073
Score = 91.5 bits (100), Expect = 1e-12
Identities = 376/586 (64%), Gaps = 8/586 (1%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || |||| || || | ||| | || |||| ||
Sbjct 8805731 GCCATTGGTATTGATTTGGGCACCACGTACACGTGCGTGGGTGTCTATCAGCATGGCAAG 8805672
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 8805671 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8805612
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| | || | ||| ||||| || || || || | || | || || || ||
Sbjct 8805611 GATTCGGAGCGTCTCATTGGCGACGCGGCCAAGAACCAGGTGGCGATGAACCCCAAGAAC 8805552
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| | || ||||| || | |||||||||| | | |||||| | | |
Sbjct 8805551 ACAGTATTCGATGCGAAGCGTCTGATTGGTCGCAGGTACGATGATCCGAAGATAGCGGAG 8805492
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626
|| || || ||||| || |||||| | | | || || || || | || | |
Sbjct 8805491 GACATCAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGCAAGCCCAAGATTGGCGTC 8805432
Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686
|| | | | || || || | ||| | || || | ||| || ||||| | |
Sbjct 8805431 CAGTTTAAG--GGGGAGCAGAAGCGTTTTGCGCCCGAGGAGATTAGCTCGATGGTGCTGG 8805374
Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACA-AGAAGTAACTGATGCAGTAATT 474745
|| ||||| |||| ||| | || || || || || | | || || || || ||
Sbjct 8805373 TGAAGATGAAGGAAACGGCGGAGGCGTACCTGGGCCAGAGCA-TCACAGACGCGGTCATC 8805315
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
|| || || || ||||| || || || || || || || || |||||||| || ||
Sbjct 8805314 ACAGTGCCCGCCTATTTCAACGACTCGCAGCGCCAGGCTACCAAAGATGCCGGCCACATA 8805255
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|| || || || || | | || || || || || || || || ||||| || |||||
Sbjct 8805254 GCCGGACTGAACGTGCTGAGGATCATCAACGAGCCGACGGCGGCGGCACTGGCCTATGGC 8805195
Query 474866 CTTGATAAGAATTCTG-ACAAAGAAGTAAATGTTTTAATCTTTGAT 474910
|| || ||||| |||| | ||| |||||||| ||||| |||
Sbjct 8805194 CTGGACAAGAA-TCTGAAGGGCGAACGCAATGTTTTGATCTTCGAT 8805150
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || ||| || || | ||| | || |||| ||
Sbjct 8812383 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8812324
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 8812323 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8812264
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| | || | ||| ||||| || || || ||
Sbjct 8812263 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8812232
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || ||| || || | ||| | || |||| ||
Sbjct 8817230 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8817289
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 8817290 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8817349
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| | || | ||| ||||| || || || ||
Sbjct 8817350 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8817381
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || ||| || || | ||| | || |||| ||
Sbjct 8831542 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8831601
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 8831602 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8831661
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| | || | ||| ||||| || || || ||
Sbjct 8831662 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8831693
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || ||| || || | ||| | || |||| ||
Sbjct 8836963 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8837022
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 8837023 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8837082
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| | || | ||| ||||| || || || ||
Sbjct 8837083 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8837114
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || ||| || || | ||| | || |||| ||
Sbjct 8843689 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8843748
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 8843749 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8843808
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| | || | ||| ||||| || || || ||
Sbjct 8843809 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8843840
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || ||| || || | ||| | || |||| ||
Sbjct 8850188 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8850247
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 8850248 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8850307
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| | || | ||| ||||| || || || ||
Sbjct 8850308 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8850339
>seq3289
Length=20206255
Score = 93.3 bits (102), Expect = 3e-13
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| || | ||| | ||| ||||| | ||| || |||| || ||
Sbjct 14369573 ACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGT 14369632
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| |||||| | ||||| ||||| ||||| | ||| || ||||| |||||||||||
Sbjct 14369633 GCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCC 14369692
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||| ||||| || ||||| ||| ||| || || ||||| | || |||||
Sbjct 14369693 TTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 14369752
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||| ||||| || || || ||||||||
Sbjct 14369753 AGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTG 14369791
>seq3313
Length=2641
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| |||||||||||||| || || || ||| || || | ||| | || |||| ||
Sbjct 1453 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 1512
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || ||||||||||||||||| || ||||| || ||||| ||||| |||| ||
Sbjct 1513 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 1572
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| | || | ||| ||||| || || || ||
Sbjct 1573 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 1604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267598832652440
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