Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3383 212 4e-49 seq3169 109 4e-18 seq3289 93.3 3e-13 seq3313 86.0 4e-11 >seq3383 Length=19223366 Score = 212 bits (234), Expect = 4e-49 Identities = 381/548 (70%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||| || | ||| | || |||| || || | Sbjct 7899050 TTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAGGTTG 7898991 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| || || |||||| | || || ||||| |||||| | || || || | Sbjct 7898990 AGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCCTATGTTGCCTTCACGGAGA 7898931 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| ||||| || || | || | || ||||| | | || | Sbjct 7898930 CGGAGCGTTTGATTGGTGATGCCGCCAAGAACCAGGTGGCCATGAATCCAACTCAAACGA 7898871 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | ||||||||||| | | |||||||| || || |||||| | | || ||||| || | Sbjct 7898870 TCTTTGATGCTAAGCGTCTTATTGGTCGCAAATTCGATGATGCGGCCGTGCAATCCGACA 7898811 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || |||| | | |||| ||| || || | || |||| | | Sbjct 7898810 TGAAGCACTGGCCCTTCGAGGTCGTTAGCGTTGATGGCAAGCCCAAGATTGAAGTTACGT 7898751 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 7898750 ACAAGGATGAG-AAGAAGACTTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 7898693 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 |||||| | |||| |||| | || | ||| ||||| || || |||| || || ||| Sbjct 7898692 AATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACGGTTACCAATGCCGTCATCACT 7898635 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| || || || || ||||| || ||||| ||||| || | || || Sbjct 7898634 GTGCCTGCCTATTTCAACGACTCACAGCGTCAGGCGACTAAGGATGCTGGTACCATCGCC 7898575 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || || ||||||||||| || ||||| || || || |||| |||||||| Sbjct 7898574 GGTTTGAACGTATTGCGTATTATTAACGAGCCAACTGCCGCGGCCATTGCCTATGGTCTG 7898515 Query 474869 GATAAGAA 474876 || ||||| Sbjct 7898514 GACAAGAA 7898507 >seq3169 Length=10161210 Score = 109 bits (120), Expect = 4e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||| || ||| | || || || || || || | ||| ||||| || |||| Sbjct 3948222 GCAATTGGCATCGATCTGGGCACAACCTATTCCTGCGTGGGTGTCTGGCAGAACAATAAA 3948163 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||| || || ||| | ||||| ||||| ||||| | |||| | Sbjct 3948162 GTGGAAATTATTGCCAATGATCAGGGCAATCGCACAACGCCATCGTATGTGGCCTTTAAT 3948103 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 ||||| |||| |||||||| ||||| ||||| |||| Sbjct 3948102 GAAACGGAACGCCTTATTGGCGATGCCGCTAAGAATCA 3948065 Score = 105 bits (116), Expect = 4e-17 Identities = 253/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 ||||| |||| ||||| || | || ||||| || || || ||||| | | || Sbjct 3947443 AATACGGTTTTCGATGCGAAGCGTTTAATTGGACGCAAGTTCGATGACCGTAAGATACAG 3947384 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||| || |||||||| || |||||||| || | ||| || || ||| | || || Sbjct 3947383 GAGGATCTGAAACATTGGCCCTTCAAGGTGATCAACGATGGGGGCAAGCCAAAAATTGAG 3947324 Query 474626 GC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | || ||||||| ||| | ||| | || || | | || ||||| | Sbjct 3947323 GTCGAGTTCAA--AGGTGAACGTAAGCGTTTTGCCCCCGAGGAGGTCAGCTCTATGGTAT 3947266 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA--CAAGAAGTAACTGATGCAG 474740 | |||| ||| ||| ||| ||| | ||||| || |||| || | ||||| | Sbjct 3947265 TGACCAAGATGCGTGAAATCGCCGAGGTT-TATCTGGGCGGCAAG--GTGAAGGATGCGG 3947209 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || || |||||||| |||||||| || ||||| || ||||||||||| || Sbjct 3947208 TTATCACAGTGCCGGCATATTTCAATGATTCACAGCGTCAGGCCACTAAAGATGCCGGCT 3947149 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || || ||| | ||||| | || || || ||||| || || || ||||| || || | Sbjct 3947148 CCATAGCCGGTTTGAATGTGCTCCGAATCATCAATGAGCCGACGGCTGCCGCCCTAGCCT 3947089 Query 474861 ATGGTCTTGATAAGAA 474876 |||| || || ||||| Sbjct 3947088 ATGGCCTGGACAAGAA 3947073 Score = 91.5 bits (100), Expect = 1e-12 Identities = 376/586 (64%), Gaps = 8/586 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || |||| || || | ||| | || |||| || Sbjct 8805731 GCCATTGGTATTGATTTGGGCACCACGTACACGTGCGTGGGTGTCTATCAGCATGGCAAG 8805672 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 8805671 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8805612 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| ||||| || || || || | || | || || || || Sbjct 8805611 GATTCGGAGCGTCTCATTGGCGACGCGGCCAAGAACCAGGTGGCGATGAACCCCAAGAAC 8805552 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| || | |||||||||| | | |||||| | | | Sbjct 8805551 ACAGTATTCGATGCGAAGCGTCTGATTGGTCGCAGGTACGATGATCCGAAGATAGCGGAG 8805492 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || || || ||||| || |||||| | | | || || || || | || | | Sbjct 8805491 GACATCAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGCAAGCCCAAGATTGGCGTC 8805432 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 || | | | || || || | ||| | || || | ||| || ||||| | | Sbjct 8805431 CAGTTTAAG--GGGGAGCAGAAGCGTTTTGCGCCCGAGGAGATTAGCTCGATGGTGCTGG 8805374 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACA-AGAAGTAACTGATGCAGTAATT 474745 || ||||| |||| ||| | || || || || || | | || || || || || Sbjct 8805373 TGAAGATGAAGGAAACGGCGGAGGCGTACCTGGGCCAGAGCA-TCACAGACGCGGTCATC 8805315 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || ||||| || || || || || || || || |||||||| || || Sbjct 8805314 ACAGTGCCCGCCTATTTCAACGACTCGCAGCGCCAGGCTACCAAAGATGCCGGCCACATA 8805255 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || || || || | | || || || || || || || || ||||| || ||||| Sbjct 8805254 GCCGGACTGAACGTGCTGAGGATCATCAACGAGCCGACGGCGGCGGCACTGGCCTATGGC 8805195 Query 474866 CTTGATAAGAATTCTG-ACAAAGAAGTAAATGTTTTAATCTTTGAT 474910 || || ||||| |||| | ||| |||||||| ||||| ||| Sbjct 8805194 CTGGACAAGAA-TCTGAAGGGCGAACGCAATGTTTTGATCTTCGAT 8805150 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | ||| | || |||| || Sbjct 8812383 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8812324 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 8812323 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8812264 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || | || | ||| ||||| || || || || Sbjct 8812263 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8812232 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | ||| | || |||| || Sbjct 8817230 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8817289 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 8817290 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8817349 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || | || | ||| ||||| || || || || Sbjct 8817350 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8817381 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | ||| | || |||| || Sbjct 8831542 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8831601 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 8831602 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8831661 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || | || | ||| ||||| || || || || Sbjct 8831662 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8831693 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | ||| | || |||| || Sbjct 8836963 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8837022 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 8837023 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8837082 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || | || | ||| ||||| || || || || Sbjct 8837083 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8837114 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | ||| | || |||| || Sbjct 8843689 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8843748 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 8843749 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8843808 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || | || | ||| ||||| || || || || Sbjct 8843809 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8843840 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | ||| | || |||| || Sbjct 8850188 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 8850247 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 8850248 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 8850307 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || | || | ||| ||||| || || || || Sbjct 8850308 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 8850339 >seq3289 Length=20206255 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || | ||| | ||| ||||| | ||| || |||| || || Sbjct 14369573 ACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGT 14369632 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| ||||| | ||| || ||||| ||||||||||| Sbjct 14369633 GCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCC 14369692 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||| || ||||| ||| ||| || || ||||| | || ||||| Sbjct 14369693 TTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 14369752 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| || || || |||||||| Sbjct 14369753 AGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTG 14369791 >seq3313 Length=2641 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | ||| | || |||| || Sbjct 1453 GCCATTGGTATTGATTTGGGCACCACGTACTCGTGCGTGGGTGTCTATCAGCATGGCAAG 1512 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| || ||||| || ||||| ||||| |||| || Sbjct 1513 GTGGAGATAATTGCCAATGACCAGGGCAATAGGACGACACCCAGCTATGTGGCTTTCACA 1572 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || | || | ||| ||||| || || || || Sbjct 1573 GATTCGGAGCGTCTCATTGGCGACGCGGCCAA 1604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267598832652440