Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3383 100 3e-16 >seq3383 Length=19223366 Score = 100 bits (110), Expect = 3e-16 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||| || || || | |||||||||||||| ||||||||||| ||||| ||||| || Sbjct 1059348 ACACCGATTGGGCCCATACCAGGACCTCCACCGCCATGTGGAATGCAGAAAGTCTTGTGC 1059407 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| ||||| | || || |||||||| | ||| ||||| ||||| || Sbjct 1059408 AGATTCAGATGGGACACGTCGCTGCCATAGTCGCCTGGCCGACACAGACCCACCTGGGCG 1059467 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || || || ||||| ||||||||||||| | || || | | || | Sbjct 1059468 TTCATGTTGGCTCCGTCTAGATACACCTGACCACCATGCTTGTGCACCAATGTGCAGA-- 1059525 Query 138363 TGTCTG---ATGTTTGTTTCAAATAC-ACCATGAGTCGATGGATATGTAATCAT 138412 |||| | ||||| |||||| || ||||| || || ||||| |||||||| Sbjct 1059526 TGTCCGCAACTGTTT-CTTCAAAAACTCCCATG-GTGGAAGGATACGTAATCAT 1059577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578900476895600