Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3289 95.1 2e-14 >seq3289 Length=20206255 Score = 95.1 bits (104), Expect = 2e-14 Identities = 204/303 (67%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 |||||||||| |||||||||||||| || || || ||||||| ||||| |||| Sbjct 9624742 CACCATAAGGCGAACGTGGATAGAATGGCGTCTGTTCATTCTGTGGGGTCTCCACAACCT 9624801 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCAT--CTCAAG 48191 | ||||| || || ||||| || ||||||| |||| | ||||| | |||| Sbjct 9624802 TGCCATACAGCTCGGACGTGGAGGCCTGATAGAATTTAACCGATTTCTCCATGCCACAAG 9624861 Query 48192 CAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTC 48251 || | || || || | | ||| ||||| | |||||| || | || || || Sbjct 9624862 --TGCGTATGGCGTCCAGAATGCGCAGCGTGCCAACGGCATCAACCTCTGCCGTGTATTC 9624919 Query 48252 GGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG 48311 | || ||||| |||||||| ||||| ||||| | |||||||||||||| ||| Sbjct 9624920 GCTCAAATCAAATGAAACCTTCACATGCGATTGTGCAGCCAGATTATAAATCTCTGTTGG 9624979 Query 48312 TTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAA 48371 | |||| | ||| | | |||| | | | || || | ||| ||||||||||| Sbjct 9624980 CTTAACCATGTTAATGATCTTCACCAGGCTGCTGCTATCCGTCATGTCGCCATAATGCAA 9625039 Query 48372 TTT 48374 ||| Sbjct 9625040 TTT 9625042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665381848259600