Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq466 150 2e-31 seq3385 87.8 2e-12 >seq466 Length=100518 Score = 150 bits (166), Expect = 2e-31 Identities = 593/913 (65%), Gaps = 31/913 (3%) Strand=Plus/Plus Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTG 75746 ||||| |||| || |||||||||| || || || |||||||||||||| | | | | Sbjct 41810 GATCTATTTTATGCCTTGTGGATTCCTGATCTCTTTATGAAGCGGGTTGAAGCCAACGAG 41869 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGG 75806 | | ||||| | | |||||| |||| || ||||| || | |||||| | Sbjct 41870 G--ATTGGTCGTTGATGTGTCCACACAAATGCCCCGGTCTGCAAGATGTTTGGGGTGAAG 41927 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAG 75866 | |||||| | || || |||||| | ||||| || ||| | ||| | Sbjct 41928 AATTTGAAAAATTGTATGTCAAATATGAAAAAGAGGGGCGACAGAATCGAATTGTTAAGG 41987 Query 75867 CCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 | | ||||| || || | |||| || ||||||||| || || || |||| Sbjct 41988 CTCAATCTCTTTGGTTTGCCATAATTGAATCTCAAGTGGAGACTGGTACCCCTTACATGC 42047 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 ||| || || | ||||||| || || || ||| | ||| | ||||| || ||| || Sbjct 42048 TTTTTAAAGACTCGTGTAACAGAAAAAGCAATCAACAAAATGTTGGAACTATAAAGTGCA 42107 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 ||| | |||||||||||| | ||||| ||| || || | ||||| || |||| Sbjct 42108 GTAATTTATGCACGGAAATTGTTGAGTATTCAGCGCCAGACGAAATAGCTGTATGTAATT 42167 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106 | |||||||| ||||| | || ||| | | || | ||| || | ||| Sbjct 42168 TAGCATCAATAGCCCTAAACATGTTTGTGACGGCCGAAA---AATCTTACGACTTCAAAA 42224 Query 76107 AACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATT 76166 |||| | || | || || |||||||||||||| || || | | ||||| | ||| | Sbjct 42225 AACTGAAAGATGTAACTAAAATTGTTACCAAAAACCTGAATAAAATAATTGATATAAACT 42284 Query 76167 TTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224 ||||||| ||| ||| || ||| || ||| | || ||| | ||||||||| | || Sbjct 42285 ATTATCCC-TTGCCAGA-GGCAAAAAAATCAAATTTACGGCACCGCCCTATTGGTATTGG 42342 Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATGAAG 76283 ||| ||||| | || |||| ||| ||| || || | | | | | ||| || |||| Sbjct 42343 TGTACAAGGGTTTGCAGATGCATTAATTCTGATGAGGTTTC-CGTATGAAAGCGAAGAAG 42401 Query 76284 CCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTT 76343 | ||||| | ||||||||||| || || | | | | |||| || |||| Sbjct 42402 CATCTCTTTTGAATCAACAAATCTTTGAAACTATTTACTATGGAGCTTTGGAAGCTAGTT 42461 Query 76344 GTGAATTGGC--TGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCA 76401 |||||||| | |||| | || | ||||| || | | || ||| | | | Sbjct 42462 GTGAATTGTCCAAGAAG--GATGGCCCGTATGAAACCTATATTGGAAGTCCAGTAAGCAA 42519 Query 76402 AGGGGTGCTTCAGTTTGATATGTGGGA-AGGTGA--AACCAAGCTCAACTACGACTGGGA 76458 || || | |||| |||||||||| | || | | ||| || || | |||||||| Sbjct 42520 GGGAGTTTTACAGTATGATATGTGGAACAGATCACCAAC--AGATC-TTTGGGACTGGGA 42576 Query 76459 TGTTCTCAAGGAACG--CATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCAC 76514 | ||| || || | ||| || || | ||| || | ||| ||||| | || || | Sbjct 42577 TCATCTTAA--AAGGTCCATAAAACAGCACGGTGTTAGAAAC--TCTTTGCTAATTGCTC 42632 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 | ||||| ||||| ||||| || ||||| |||| || ||||| | || || || |||| Sbjct 42633 CCATGCCCACAGCATCCACTGCGCAAATAATGGGCAACAATGAGTCGTTCGAGCCCTACA 42692 Query 76575 CAACAAACATCTA 76587 | ||||||| || Sbjct 42693 CTTCAAACATTTA 42705 >seq3385 Length=25233164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 274/419 (65%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||| ||| |||||| | | | || ||| || ||||| || ||||| Sbjct 4856758 GGCGCCAAGATACCCAAGGGCGCCATGTTAACCGGCCCGCCCGGCACGGGCAAAACCCTG 4856817 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGC-TCTGCCGCAAA 175394 || ||| || | || || || | ||||| ||||| ||| | || || | | | | Sbjct 4856818 CTGGCCAAGGCGACGGCTGGCGAGGCGAATGTACCATTTATC-ACTGTATCCGGCTCGGA 4856876 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||| | || |||||||| ||||| ||| || | || || || | || | || || Sbjct 4856877 GTTTCTCGAAATGTTTGTGGGTGTCGGTCCCTCTCGAGTCCGTGACATGTTCGCCATGGC 4856936 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 ||| | | || || || |||| || |||||||| ||||| || ||| | |||| Sbjct 4856937 GCGCAAGCACGCGCCGTGCATACTCTTTATCGATGAGATCGATGCCGTTGGCCGGAAACG 4856996 Query 175515 CAGCG-CTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 ||| | || || | || | | |||| || | ||| | ||||| || || Sbjct 4856997 TGGCGGCAAAACGTTTGGCGGCCATTC-CGAGCAGGAGAATACACTGAATCAGCTGCTGG 4857055 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 ||| |||||||||||| | | || | | ||||| | || ||||| ||||||| Sbjct 4857056 TCGAAATGGATGGCTTTAATACGACCACGAACGTGGTGGTGCTGGCTGCCACCAATCGCG 4857115 Query 175634 TGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGTG 175692 |||| || || || | || || | || ||||| ||||| |||||| ||||| | ||| Sbjct 4857116 TGGACATTCTGGACAAGGCGCTGATGCGTCCGGGACGTTTCGATCGCCAGATCTATGTG 4857174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596468705166400