Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3289 140 6e-28 >seq3289 Length=20206255 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || || |||| |||||| |||| |||||| ||||| ||||| || Sbjct 14369568 CCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAA 14369627 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | | ||| || || || || || || |||||||| | ||| ||||| ||||| Sbjct 14369628 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGA 14369687 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||||||||| || || || |||| ||| | ||| || ||||| || | || || Sbjct 14369688 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACC 14369747 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || ||||| || || ||||||||||| |||||||| Sbjct 14369748 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899502245949600