Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3378 116 1e-20 seq466 102 2e-16 seq3383 89.7 2e-12 >seq3378 Length=5191987 Score = 116 bits (128), Expect = 1e-20 Identities = 184/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| |||||||||||||| || || ||| | ||| || || || ||| Sbjct 3336168 TCCATAGCCTTGATCAAACGACGCTGAATGTAGCCGGTTTCGGCTGTCTTGACGGCCGTA 3336109 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| | ||||| ||||| |||||||| | | ||| || ||| || || Sbjct 3336108 TCGATGAGACCCTCGCGACCGCCCATGGCATGGAAATAGAACTC-GGAGGGCGTCAGGCC 3336050 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | ||||| | || || || || | | |||||| || ||| |||| | || Sbjct 3336049 AGCCAGATAGGAGTTTTCCACAAAGCCCCTGGACTCGGGACCATAATCGTCCTTGATGAA 3335990 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || ||||| || | ||| ||||||| || |||||||| || || ||||||||||| Sbjct 3335989 ATGCGGCAGAGTGCGCTTCCGGAAGCCGTACGGTATACGCTTGCCCTCCACGTTCTGCTG 3335930 Query 302814 TCCCAGGCACGAAATCATCTG 302834 |||| || | ||| | ||| Sbjct 3335929 GCCCACACAAGCAATAACCTG 3335909 >seq466 Length=100518 Score = 102 bits (112), Expect = 2e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 ||||||||||| ||||| || || || || || || | ||||| || | | ||| Sbjct 41700 CCACCCTGATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCA 41641 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGT 156182 || ||||| ||||| || ||| |||| | || || |||| | ||||| || Sbjct 41640 TTTGAAGTACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTA 41581 Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242 || ||||| || |||| | |||| || || ||||| | || ||| || || || || Sbjct 41580 AGACCAATGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATT 41521 Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302 |||||||||||||| | |||||| || ||| | || || |||||| || || | Sbjct 41520 CCTTCAATAGAATCCGATGCCATTGTTAAAAGAAAACATGATGATAATTGGGGACGGTTT 41461 Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 || |||| || || || |||| |||||| ||||||| Sbjct 41460 GTGGCAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATA 41420 >seq3383 Length=19223366 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || |||||||| ||||||||| || ||||||||||| ||||| || || || ||| Sbjct 17994095 ATTGTCATACGCGAGGGAATAGCGTGCGGATTGATGATAATGTCTGGCGCCAAACCCTCA 17994036 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963 ||||| ||||| |||| || | | ||| ||| | ||| || ||||| |||||||| Sbjct 17994035 CAGGTGAATGGCATGTCCTCTTGC-CGATACTGTATGCCACATGTACCCTTCTGTCCGTG 17993977 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| || ||||| || ||||| || ||| || ||| | ||||| ||| || Sbjct 17993976 ACGCGAGGCAAACTTGTCGCCAATCTGTGGTATGCGCACTGAACGCACGCGAATCTTGCA 17993917 Query 252024 GAAGTTGTAACCATCACCGTT 252044 ||| || || || || | ||| Sbjct 17993916 GAACTTATAGCCCTCGCTGTT 17993896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471562455819610