Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3378 116 1e-20
seq466 102 2e-16
seq3383 89.7 2e-12
>seq3378
Length=5191987
Score = 116 bits (128), Expect = 1e-20
Identities = 184/261 (70%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| |||||| |||||||||||||| || || ||| | ||| || || || |||
Sbjct 3336168 TCCATAGCCTTGATCAAACGACGCTGAATGTAGCCGGTTTCGGCTGTCTTGACGGCCGTA 3336109
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693
|| || ||||| | ||||| ||||| |||||||| | | ||| || ||| || ||
Sbjct 3336108 TCGATGAGACCCTCGCGACCGCCCATGGCATGGAAATAGAACTC-GGAGGGCGTCAGGCC 3336050
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753
| | | ||||| | || || || || | | |||||| || ||| |||| | ||
Sbjct 3336049 AGCCAGATAGGAGTTTTCCACAAAGCCCCTGGACTCGGGACCATAATCGTCCTTGATGAA 3335990
Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813
|| ||||| || | ||| ||||||| || |||||||| || || |||||||||||
Sbjct 3335989 ATGCGGCAGAGTGCGCTTCCGGAAGCCGTACGGTATACGCTTGCCCTCCACGTTCTGCTG 3335930
Query 302814 TCCCAGGCACGAAATCATCTG 302834
|||| || | ||| | |||
Sbjct 3335929 GCCCACACAAGCAATAACCTG 3335909
>seq466
Length=100518
Score = 102 bits (112), Expect = 2e-16
Identities = 191/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122
||||||||||| ||||| || || || || || || | ||||| || | | |||
Sbjct 41700 CCACCCTGATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCA 41641
Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGT 156182
|| ||||| ||||| || ||| |||| | || || |||| | ||||| ||
Sbjct 41640 TTTGAAGTACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTA 41581
Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242
|| ||||| || |||| | |||| || || ||||| | || ||| || || || ||
Sbjct 41580 AGACCAATGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATT 41521
Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302
|||||||||||||| | |||||| || ||| | || || |||||| || || |
Sbjct 41520 CCTTCAATAGAATCCGATGCCATTGTTAAAAGAAAACATGATGATAATTGGGGACGGTTT 41461
Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343
|| |||| || || || |||| |||||| |||||||
Sbjct 41460 GTGGCAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATA 41420
>seq3383
Length=19223366
Score = 89.7 bits (98), Expect = 2e-12
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904
|| |||||||| ||||||||| || ||||||||||| ||||| || || || |||
Sbjct 17994095 ATTGTCATACGCGAGGGAATAGCGTGCGGATTGATGATAATGTCTGGCGCCAAACCCTCA 17994036
Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963
||||| ||||| |||| || | | ||| ||| | ||| || ||||| ||||||||
Sbjct 17994035 CAGGTGAATGGCATGTCCTCTTGC-CGATACTGTATGCCACATGTACCCTTCTGTCCGTG 17993977
Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023
||| || ||||| || ||||| || ||| || ||| | ||||| ||| ||
Sbjct 17993976 ACGCGAGGCAAACTTGTCGCCAATCTGTGGTATGCGCACTGAACGCACGCGAATCTTGCA 17993917
Query 252024 GAAGTTGTAACCATCACCGTT 252044
||| || || || || | |||
Sbjct 17993916 GAACTTATAGCCCTCGCTGTT 17993896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471562455819610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |