Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3378 159 3e-34 seq3603 100 2e-16 >seq3378 Length=5191987 Score = 159 bits (176), Expect = 3e-34 Identities = 162/209 (78%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| ||||||||| |||||||| || || || |||||||| ||||| || ||||||| Sbjct 4165373 ATCGAACTGCGTTTGGGCGCCCAGTTCACAGCCAAAGTACTTGGTCGGATAGGTGGCCGG 4165314 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 || || | || || | ||||| ||||||||| | ||| || |||||||||||||| Sbjct 4165313 GCGGCCGATGGCGCGCGCCACTTCGGCCATGTTGACCAGGACCGTTTTGATGCCGTTGCC 4165254 Query 34557 CTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||| || ||||||||||| | ||| |||||||| |||||||| ||||| ||||| Sbjct 4165253 CTTGCCCTCGACCTTGGCCTGTAGA--CGCGGCATCTTGTAGCGATAGAAGATGTCCGTT 4165196 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCAT 34643 || ||||||| || || || ||| |||| Sbjct 4165195 ACGCTGCGGTTCACATTGACGGTCGCCAT 4165167 >seq3603 Length=2672878 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| ||||| | |||||||| ||||| ||| | || ||||| Sbjct 316128 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 316187 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || || || || ||||||||||| | || ||| Sbjct 316188 TCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 316247 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || ||||||||||||| | | || | |||| ||| Sbjct 316248 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 316307 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| || || || |||||| ||||| | | ||||| || || Sbjct 316308 AACATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 316357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412773523710290