Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq359 143 2e-29 seq3378 109 4e-19 seq3289 87.8 1e-12 >seq359 Length=456481 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| || || ||||| || || |||| |||| Sbjct 66331 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCT 66272 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 66271 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCT 66212 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | ||| || || | || |||||| Sbjct 66211 TGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTC 66152 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| |||||||| || ||||||||||| Sbjct 66151 TTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66120 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 66103 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCT 66044 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 66043 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCT 65984 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | ||| || || | ||| |||||| Sbjct 65983 TGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTC 65924 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| | || ||||| ||||||||||| Sbjct 65923 TTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 65892 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| || || ||||| || || |||| |||| Sbjct 66787 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCT 66728 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| ||||| |||||||| || ||||||||| | || | ||||||||||| Sbjct 66727 TCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 66668 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | ||| || || | || |||||| Sbjct 66667 TGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTC 66608 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| |||||||| || ||||||||||| Sbjct 66607 TTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||| ||||| || || || | |||| |||| Sbjct 66559 AGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCT 66500 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| ||||| |||||||| || ||||||||| | || | ||||||||||| Sbjct 66499 TCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCC 66440 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | | ||| || || | || |||||| Sbjct 66439 TGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTC 66380 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| |||||||| || ||||||||||| Sbjct 66379 TTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348 >seq3378 Length=5191987 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||||||||| ||||| || | | || |||| Sbjct 4218034 CAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATC 4217975 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 4217974 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTC 4217915 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | || | ||| || || | ||| ||| Sbjct 4217914 CTGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATG 4217857 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || | |||||| || |||||||||||| Sbjct 4217856 GTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| ||||| ||||| || | | |||| |||| Sbjct 4217121 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 4217062 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||||| || ||||| ||| | || | ||||||||||| Sbjct 4217061 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 4217002 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 4217001 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGG 4216944 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | |||||| || |||||||||||| Sbjct 4216943 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4216909 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| ||||| ||||| || | | |||| |||| Sbjct 4217805 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 4217746 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||||| || ||||| ||| | || | ||||||||||| Sbjct 4217745 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 4217686 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 4217685 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGG 4217628 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | |||||| || |||||||||||| Sbjct 4217627 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217593 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || | | || |||| Sbjct 4216893 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 4216834 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 4216833 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 4216774 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 4216773 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGG 4216716 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | |||||| || ||||||||||| Sbjct 4216715 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| ||||| ||||| || | | |||| |||| Sbjct 4217349 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 4217290 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||||| || ||||| ||| | || | ||||||||||| Sbjct 4217289 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 4217230 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| || | Sbjct 4217229 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAG 4217172 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | |||||| || |||||||||||| Sbjct 4217171 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217137 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || | | || |||| Sbjct 4217577 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 4217518 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 4217517 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 4217458 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 4217457 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGG 4217400 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | |||||| || |||||||||||| Sbjct 4217399 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365 >seq3289 Length=20206255 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || || ||||| || ||| |||| |||| |||| ||||| || ||||| Sbjct 14369603 CTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAA 14369662 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || | || ||||| ||| | || | || || ||||| | || || ||| || | Sbjct 14369663 AATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAAC--A 14369720 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || | ||||| |||| || |||||||| ||||||||||| ||| Sbjct 14369721 TTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTT 14369780 Query 34964 ACAAAGATCTGCAT 34977 ||||| || ||||| Sbjct 14369781 ACAAAAATTTGCAT 14369794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325639094275070