Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3603 100 2e-16 >seq3603 Length=2672878 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 ||||||||||| ||||| ||||| | || ||||| ||||| ||| | || ||| | Sbjct 316128 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 316187 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | || || || || || |||||||| | || ||| Sbjct 316188 TCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 316247 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||| || || ||||||||||| | | || | |||||||| Sbjct 316248 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 316307 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||||| || |||||| ||||| || | |||| || || Sbjct 316308 AACATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 316357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398811026462170