Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3383 318 4e-81 seq3169 109 4e-18 seq3133 87.8 1e-11 >seq3383 Length=19223366 Score = 318 bits (352), Expect = 4e-81 Identities = 957/1463 (65%), Gaps = 16/1463 (1%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || ||||| |||||||| |||||||| | ||| || || || ||||| || || || Sbjct 7897600 GGCGGTAACATTCAGAATACCGTTGGCATCAATATCGAAGGTCACCTCAATCTGGGGCAC 7897659 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | | || |||||||| || || | ||| | |||| ||| ||||| || Sbjct 7897660 ACCGCGTGGTGCTGGTGGGATACCCGACAGCTCGAATTTGCCCAACAGATTGTTATCCTT 7897719 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || || || ||| | | |||||| || ||| |||||||| ||||| Sbjct 7897720 GGTCATGGCGCGCTCGCCTTCGTACACTTGGATCAACACACCAGGCTGATTATCCGAATA 7897779 Query 281605 AGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 || || || |||| | | ||| ||||| || ||||| | | || | | Sbjct 7897780 GGTGGTGAAGG-TCTGCGTCTGCTTAGTGGGAATGGTGGTGTTACGCTTGATGAGCACGC 7897838 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | |||||||| || || | ||| ||||| || || || ||||| | || | | Sbjct 7897839 TCATCACGCCACCAGCAGTCTCGATACCCAGAGACAGGGGGGTAACATCGAGCAGCAGCA 7897898 Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCA 281782 || || | | | | | ||| ||||| | || || || | ||||||||| Sbjct 7897899 GATCCTGCACCTCCTGCGACTTGTCACCGTGCAAGA-TGGCAGCCTGGACGGCAGCACCA 7897957 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT- 281841 || |||||||| ||||| ||||| | | | || || | || || ||||| | || Sbjct 7897958 TAGGCAACAGCCTCATCGGGATTGATGGACTTGTTCAGCTCCTTGCCGTTGAACAGATCC 7898017 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || || | | | ||||| || ||||||| || || || || | ||||| || || Sbjct 7898018 TGTAACAGGCGCTGC-ACCTTGGGGATACGAGTGGAGCCACCGACCAGCACAATATCGTG 7898076 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA--GACCA 281959 | || || ||||| || | ||| | | | || || ||||| || | | | Sbjct 7898077 AATAGCCGACTTGTCCAGCTTGGCATCACGCAGAGCCTTCTCCACGGGATCCATGGTGCT 7898136 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 || ||| | || | || || ||||| ||| | || | | | || || Sbjct 7898137 GCGGAAAAGA--TCGGCGTTCAGCTCCTCGAAACGAGCACGCGTGATCGAGGTATAGAAA 7898194 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || | |||||||||| ||||||| |||||| ||| ||||| || || ||||| | | Sbjct 7898195 TCGGTACCTTCGAACAGCGAATCAATTTCAATGCTAGCCTGAGTGGAGGATGATAGCGTA 7898254 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCA 282137 || || ||||| ||||| || || | || | || | || ||| ||| | ||| Sbjct 7898255 CGCTTTGCACGCTCACAGGCGGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGTCA 7898312 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 |||| | || | || | |||||| || | ||| | || || |||||||| |||| Sbjct 7898313 AATCCTTCTTGTGCTTGCGCTTGAACTCCTGTACAAAGTGAGTGACTAGACGATTGTCAA 7898372 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || ||||| ||||| | |||| || | ||||| | | || | ||| | || || | Sbjct 7898373 AGTCCTCACCACCCAAATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCCGTCAT 7898432 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| ||||| || | ||||| ||| || || |||| ||| ||||| | ||||| Sbjct 7898433 CAATAGACAGAATGGAGACATCGAAGGTACCGCCGCCCAAATCGAAAATCAACACATTAC 7898492 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 ||| | || || || |||||||| |||| || || |||||||| || |||| Sbjct 7898493 GCTCTCCAACCGCCTTCTTGTCCAGACCATAGGCAATGGCCGCGGCAGTTGGCTCGTTAA 7898552 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 |||| | ||| || || | ||| || || | || ||||| ||||| || || | |||| Sbjct 7898553 TAATACGCAATACGTTCAAACCGGCGATGGTACCAGCATCCTTAGTCGCCTGACGCTGTG 7898612 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 | ||||| ||||| ||||| ||||| || ||||||| || || || || | || | Sbjct 7898613 AGTCGTTGAAATAGGCAGGCACAGTGATGACGGCATTGGTAACCGTCTTGCCCAGGTACG 7898672 Query 282498 CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATT 282557 | || || | |||||||| | || | ||| || || || | || || ||| | Sbjct 7898673 CCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GAAGAAA 7898731 Query 282558 G-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 282616 | ||| |||| | || | ||||||| | || || | |||| ||| || Sbjct 7898732 GTCTTCTTCTCATCCTTGTACGTAACTTCAATCTTGGGCTTGCCATCAACGCTAACGACC 7898791 Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 | || ||||| | ||||| || ||||| || |||| || | | |||||| Sbjct 7898792 TCGAAGGGCCAGTGCTTCATGTCGGATTGCACGGCCGCATCATCGAATTTGCGACCAATA 7898851 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 | || || |||||||| || || | |||||||| | || | || | ||||| ||| Sbjct 7898852 AGACGCTTAGCATCAAAGATCGTTTGAGTTGGATTCATGGCCACCTGGTTCTTGGCGGCA 7898911 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || ||||||| | | || ||||| || || | |||||| ||||| || || |||||||| Sbjct 7898912 TCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAGGATGGGGTGGTACGATTACCC 7898971 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 ||||| || ||||| || ||||| || |||| || | ||||| || ||| | ||| Sbjct 7898972 TGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGGTT 7899031 Query 282857 GTTCCTAAATCAATACCAATAGC 282879 || || ||||||||||||| ||| Sbjct 7899032 GTGCCCAAATCAATACCAACAGC 7899054 >seq3169 Length=10161210 Score = 109 bits (120), Expect = 4e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| || || ||||| ||||| || |||| || || |||| | ||||| ||||| Sbjct 3948065 TGATTCTTAGCGGCATCGCCAATAAGGCGTTCCGTTTCATTAAAGGCCACATACGATGGC 3948124 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 ||||||||||| || |||||||| ||||||||||| |||||| || ||||| ||||| Sbjct 3948125 GTTGTGCGATTGCCCTGATCATTGGCAATAATTTCCACTTTATTGTTCTGCCAGACACCC 3948184 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || || | | ||||| || | ||| || ||||| || Sbjct 3948185 ACGCAGGAATAGGTTGTGCCCAGATCGATGCCAATTGC 3948222 Score = 100 bits (110), Expect = 2e-15 Identities = 223/334 (67%), Gaps = 3/334 (1%) Strand=Plus/Plus Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 |||||| || | || || ||||| ||| | | ||||| ||||| ||||| || | Sbjct 3946882 TTTTATGCTTCCGTTTAAACTCTTCCACAAAGTGATTGACAAGTCGATTGTCAAAGTCCT 3946941 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCAA 282260 | || |||| | |||| || | || || | || | ||| || || || || | Sbjct 3946942 CGCCGCCCAGATGTGTATCGCCCGCAGTGGCCTTGACCTCGAACAGCGAACCCTCATCGA 3947001 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | || | | |||||| ||| || || |||| |||||| || | ||||| | Sbjct 3947002 TGGTCAGTATGGAGACATCAAAGGTGCCGCCGCCCAAATCAAATATCAACACATTACGCT 3947061 Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 | | | |||| || || || ||||| || | || ||||| || || ||||| || | Sbjct 3947062 CCCCCTTTAGGTTCTTGTCCAGGCCATAGGCTAGGGCGGCAGCCGTCGGCTCATTGATGA 3947121 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 ||| | ||||| | ||| || || || |||||||||||||| || | ||||||| Sbjct 3947122 TTCGGAGCACATTCAAACCGGCTATGGAGCCGGCATCTTTAGTGGCCTGACGCTGTGAAT 3947181 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 | || |||||||| || || || ||||| ||||| Sbjct 3947182 CATTGAAATATGCCGGCACTGTGATAACCGCATC 3947215 >seq3133 Length=4096053 Score = 87.8 bits (96), Expect = 1e-11 Identities = 274/421 (65%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 281387 ATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCA 281446 || ||||| ||||||| ||| ||| | || |||| ||||||| ||||| ||| Sbjct 3075301 ATGGTAATGTTCTTGGCATTGCCGGTTCCCATCTCCTTGGCATTCACATTGAGAATGCCA 3075360 Query 281447 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 281506 |||||||||| ||||| |||||||| | || ||||| || | | | || || || || Sbjct 3075361 TTGGCATCCAGGTCAAAAGTGACTTCCACTTTTGGGACACCGCGCGGCGCTGGCGGTATG 3075420 Query 281507 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 281566 || ||| || || || ||||| || || || || || | || || ||||| Sbjct 3075421 CCGGTCAAGTTGAAAGTGCCCAGCACGTTGTTGTCCTTCGTCATGGCGCGCTCGCCCTCA 3075480 Query 281567 AAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT 281626 || | |||| ||| || | | || || || | || || || || | || | Sbjct 3075481 AACACCTGGACAGTCACAGCGGGCTGGTTGTCCGCGTATGTGGTGAAGGTCTTTGACTGC 3075540 Query 281627 TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCT 281686 || || ||||| |||| | ||||| | |||||||| | || |||||||||||| Sbjct 3075541 TTGCAGGGAATGCGACTGTTCCGCTCAATCAGTTTGGTCATCACTCCGCCAGCTGTTTCT 3075600 Query 281687 AAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CAATATTTTGAAGTTTTTCATCAGT 281745 | || | || ||||| | || || || || | || |||| ||| | | | Sbjct 3075601 ATGCCCAATGAGAGAGGTGCCACGTCGACCAGCAGCACGTCCTTGA--TTTGGCTGCTCT 3075658 Query 281746 -TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGAT 281804 | ||| ||| || || ||||| || || || ||||| || || ||||| || |||| Sbjct 3075659 CGTCTCCACTAAGTATGGCAGCTTGTATGGCGGCGCCATAGGCGACGGCTTCGTCTGGAT 3075718 Query 281805 T 281805 | Sbjct 3075719 T 3075719 Score = 87.8 bits (96), Expect = 1e-11 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACC 282672 ||||| |||||||| | ||||| || ||||| |||||| |||| || | | || Sbjct 3078762 ACTTTGAATGGCCAGTGCTTCATGTCATCTTGAAT-CTTTGGATCATCGAACTTGCGTCC 3078704 Query 282673 AATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGC 282732 ||| || ||||| || || || | | | || | ||||| | || | || | ||||| Sbjct 3078703 AATCAAACGTTTCGCGTCGAAGACACTGTTCTTCGGATTCATGGCCACCTGGTTCTTGGC 3078644 Query 282733 TGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATT 282792 || |||||||||| | || | || ||||||| ||||| || || |||||||| Sbjct 3078643 CGCGTCTCCAATCAACCGCTCCGAGTCGGTAAATGCCACATAGCTGGGCGTGGTGCGATT 3078584 Query 282793 ACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAA 282852 || || || || || || || || || || || | || | ||||| || || | Sbjct 3078583 GCCCTGGTCGTTGGCTATTATCTCCACCTTGCCGTGCTGGAAGACACCCACGCACGAGTA 3078524 Query 282853 AGTTGTTCCTAAATCAATACCAATAGC 282879 || ||||| | |||||||||||| || Sbjct 3078523 CGTGGTTCCCAGATCAATACCAATGGC 3078497 Score = 87.8 bits (96), Expect = 1e-11 Identities = 274/421 (65%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 281387 ATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCA 281446 || ||||| ||||||| ||| ||| | || |||| ||||||| ||||| ||| Sbjct 3079992 ATGGTAATGTTCTTGGCATTGCCGGTTCCCATCTCCTTGGCATTCACATTGAGAATGCCA 3079933 Query 281447 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 281506 |||||||||| ||||| |||||||| | || ||||| || | | | || || || || Sbjct 3079932 TTGGCATCCAGGTCAAAAGTGACTTCCACTTTTGGGACACCGCGCGGCGCTGGCGGTATG 3079873 Query 281507 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 281566 || ||| || || || ||||| || || || || || | || || ||||| Sbjct 3079872 CCGGTCAAGTTGAAAGTGCCCAGCACGTTGTTGTCCTTCGTCATGGCGCGCTCGCCCTCA 3079813 Query 281567 AAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT 281626 || | |||| ||| || | | || || || | || || || || | || | Sbjct 3079812 AACACCTGGACAGTCACAGCGGGCTGGTTGTCCGCGTATGTGGTGAAGGTCTTTGACTGC 3079753 Query 281627 TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCT 281686 || || ||||| |||| | ||||| | |||||||| | || |||||||||||| Sbjct 3079752 TTGCAGGGAATGCGACTGTTCCGCTCAATCAGTTTGGTCATCACTCCGCCAGCTGTTTCT 3079693 Query 281687 AAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CAATATTTTGAAGTTTTTCATCAGT 281745 | || | || ||||| | || || || || | || |||| ||| | | | Sbjct 3079692 ATGCCCAATGAGAGAGGTGCCACGTCGACCAGCAGCACGTCCTTGA--TTTGGCTGCTCT 3079635 Query 281746 -TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGAT 281804 | ||| ||| || || ||||| || || || ||||| || || ||||| || |||| Sbjct 3079634 CGTCTCCACTAAGTATGGCAGCTTGTATGGCGGCGCCATAGGCGACGGCTTCGTCTGGAT 3079575 Query 281805 T 281805 | Sbjct 3079574 T 3079574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739966134177780