Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3289 140 6e-28 seq3134 98.7 2e-15 >seq3289 Length=20206255 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || |||| |||||| |||||||| ||||| || ||||| || | | ||| Sbjct 14369580 CGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCA 14369639 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || ||||| || |||| | || ||||||||||| |||||||| || Sbjct 14369640 TCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTG 14369699 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||| ||||| || || ||||| ||||| || || | ||| || Sbjct 14369700 TCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 14369759 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || |||||||| || ||||| Sbjct 14369760 GTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq3134 Length=2474545 Score = 98.7 bits (108), Expect = 2e-15 Identities = 177/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 || || ||||||||| | ||| | | ||||||||||| ||||||||| | || ||||| Sbjct 1232337 GAGGGCAAAATGCATGGATTTCTGCGCATGTACTGGGCCAAAAAGATATTGGAGTGGACG 1232278 Query 198432 AGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGAC 198491 ||| || || || ||| || || || || ||| | |||||| || ||| Sbjct 1232277 GAAACGCCAGAGCTGGCATTGGAATACAGCATACTGCTGAACGACAAGTACAGCCTGGAC 1232218 Query 198492 GGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCG 198550 || ||| ||||| || || || || || || |||||||| || |||| | || || | Sbjct 1232217 GG-ACGCGATCCCAATGGCTATGTGGGCTGCATGTGGTCCATAGGCGGTGTTCACGACCA 1232159 Query 198551 AGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAA 198610 || ||||| || | || ||||| |||||| | || ||||| ||| |||| | ||| Sbjct 1232158 AGGCTGGAAGGAGCGCGACATCTTTGGCAAGATACGCTACATGAACTATCAGGGCTGTAA 1232099 Query 198611 GAAAAAATTTGATGTT 198626 | || |||||| || Sbjct 1232098 GCGCAAGTTTGATATT 1232083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981656997186670