Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq3289 140 6e-28
seq3134 98.7 2e-15
>seq3289
Length=20206255
Score = 140 bits (154), Expect = 6e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || || |||| |||||| |||||||| ||||| || ||||| || | | |||
Sbjct 14369580 CGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCA 14369639
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | || || ||||| || |||| | || ||||||||||| |||||||| ||
Sbjct 14369640 TCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTG 14369699
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| ||||| ||||| || || ||||| ||||| || || | ||| ||
Sbjct 14369700 TCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 14369759
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | || |||||||| || |||||
Sbjct 14369760 GTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
>seq3134
Length=2474545
Score = 98.7 bits (108), Expect = 2e-15
Identities = 177/256 (69%), Gaps = 2/256 (1%)
Strand=Plus/Minus
Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431
|| || ||||||||| | ||| | | ||||||||||| ||||||||| | || |||||
Sbjct 1232337 GAGGGCAAAATGCATGGATTTCTGCGCATGTACTGGGCCAAAAAGATATTGGAGTGGACG 1232278
Query 198432 AGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGAC 198491
||| || || || ||| || || || || ||| | |||||| || |||
Sbjct 1232277 GAAACGCCAGAGCTGGCATTGGAATACAGCATACTGCTGAACGACAAGTACAGCCTGGAC 1232218
Query 198492 GGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCG 198550
|| ||| ||||| || || || || || || |||||||| || |||| | || || |
Sbjct 1232217 GG-ACGCGATCCCAATGGCTATGTGGGCTGCATGTGGTCCATAGGCGGTGTTCACGACCA 1232159
Query 198551 AGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAA 198610
|| ||||| || | || ||||| |||||| | || ||||| ||| |||| | |||
Sbjct 1232158 AGGCTGGAAGGAGCGCGACATCTTTGGCAAGATACGCTACATGAACTATCAGGGCTGTAA 1232099
Query 198611 GAAAAAATTTGATGTT 198626
| || |||||| ||
Sbjct 1232098 GCGCAAGTTTGATATT 1232083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981656997186670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |