Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3134 104 4e-17 >seq3134 Length=2474545 Score = 104 bits (114), Expect = 4e-17 Identities = 198/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 183022 CTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGA 183081 || ||||| | |||| | ||| || ||| || || ||||||||| | ||| | || Sbjct 1232370 CTGTGGAACTCGGCACAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCGC 1232311 Query 183082 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTAT 183141 ||||||||||| ||||||||| | || ||||| ||| || || || ||| || Sbjct 1232310 ATGTACTGGGCCAAAAAGATATTGGAGTGGACGGAAACGCCAGAGCTGGCATTGGAATAC 1232251 Query 183142 AGTATCTATATGAACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGATACGTAGG 183200 || || ||||| | |||||| || ||||| ||| ||||| || || || || || Sbjct 1232250 AGCATACTGCTGAACGACAAGTACAGCCTGGACGG-ACGCGATCCCAATGGCTATGTGGG 1232192 Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGG 183260 || |||||||| || |||| | ||||| || ||||| || | || ||||| Sbjct 1232191 CTGCATGTGGTCCATAGGCGGTGTTCACGACCAAGGCTGGAAGGAGCGCGACATCTTTGG 1232132 Query 183261 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTT 183309 |||||| | || ||||| ||| || | | |||| || |||||| || Sbjct 1232131 CAAGATACGCTACATGAACTATCAGGGCTGTAAGCGCAAGTTTGATATT 1232083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903258410580800