Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq359 132 5e-26 seq3378 118 1e-21 seq3385 116 4e-21 seq3603 100 3e-16 seq3289 100 3e-16 seq3134 96.9 3e-15 >seq359 Length=456481 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| || | ||| ||| | || || || Sbjct 66097 AAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCA-TCTTCCAG 66039 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || || ||||||||||| |||||||| || |||||||| ||| Sbjct 66038 TTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGAT 65979 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | ||| |||| |||||||| || | ||||| ||| || || Sbjct 65978 CTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCC 65919 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||||||| |||||||| Sbjct 65918 CGTCAAAGTTTTTACGAAGATCTGCAT 65892 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| |||||||| || | ||| ||| | || || || Sbjct 66325 AAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCA-TCTTCCAG 66267 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || || ||||||||||| |||||||| || |||||||| ||| Sbjct 66266 TTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGAT 66207 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||| |||| |||||||| || | || | ||| || || Sbjct 66206 CTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCC 66147 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 66146 CGTCAGGGTCTTCACGAAGATCTGCAT 66120 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| |||||||| || | ||| ||| | || || || Sbjct 66781 AAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCA-TCTTCCAG 66723 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | || || ||||||||||| ||||| ||||| |||||||| ||| Sbjct 66722 TTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGAT 66663 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||| |||| |||||||| || | || | ||| || || Sbjct 66662 CTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCC 66603 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 66602 CGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| || |||||||| || |||| | | | || || || Sbjct 66553 AAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCA-TCTTCCAG 66495 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | || || ||||||||||| |||||||| || |||||||| || Sbjct 66494 TTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGAAT 66435 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || || | |||||||| || | || | ||| || || Sbjct 66434 CTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCC 66375 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 66374 CGTCAGGGTCTTCACGAAGATCTGCAT 66348 >seq3378 Length=5191987 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || || | | | ||||| ||||||||||| Sbjct 4217562 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCA-TCCTCCAGCTGCTTGCC 4217504 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || || || || || |||||||| |||||| ||| Sbjct 4217503 GGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 4217444 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || |||| |||||||| || | ||||| ||| ||||| |||| || Sbjct 4217443 AACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGT 4217384 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4217383 CTTGACGAAGATCTGCATG 4217365 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || || | | | ||||| ||||||||||| Sbjct 4218018 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCA-TCCTCCAGCTGCTTGCC 4217960 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || || || || || |||||||| |||||| ||| Sbjct 4217959 GGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 4217900 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || |||| |||||||| || | ||||| ||| ||||| |||| || Sbjct 4217899 AACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGT 4217840 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4217839 CTTGACGAAGATCTGCATG 4217821 >seq3385 Length=25233164 Score = 116 bits (128), Expect = 4e-21 Identities = 239/351 (68%), Gaps = 7/351 (2%) Strand=Plus/Minus Query 116472 GCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGA 116531 |||||||||||| ||||| ||||| ||||||| || ||| ||||||| || | || Sbjct 23153536 GCACGGCTTCCATGTGCATGAGTTCGGCGACAACACCAATGGCTGCATGTCGTCGGGACC 23153477 Query 116532 ACACTTCAA-CCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCG 116590 |||||||| ||| ||| | |||| || ||||| || | || || ||| || | | Sbjct 23153476 GCACTTCAATCCCTACCAG-AAGGAGCATGGCGCACCGACCGACGAGAATCGCCATCTGG 23153418 Query 116591 GTGACCTGGGCAACATTGAGGCCAAAGTGTCCAACGCGCTCACTGCCGTGGACAAGATCG 116650 | || |||||||||| ||||| | ||| | |||| ||||| ||| || Sbjct 23153417 GCGATTTGGGCAACATCATCGCCAATG---GAGACGGTCCCACTCCCGTGAACATCTGCG 23153361 Query 116651 ACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAGTCTCGTCGTGCACA 116710 | | ||| || || |||||| | ||| | | || |||| | || |||||| Sbjct 23153360 ATTGCAAGATCACATTGCTCGGCGCCAATAGCATTATTGGACGCACCGTTGTGGTGCACG 23153301 Query 116711 CCAACGCCGACGACCTGGGACTGGGCCAGCACCCGCTTAGCAAAACCACCGGCAACTCGG 116770 || | |||| |||||||| |||| ||| ||| ||||| || || |||||| ||| Sbjct 23153300 CCGATCCCGATGACCTGGGCAAGGGCGGACACGAGCTGAGCAAGACAACTGGCAACGCGG 23153241 Query 116771 GCGGCCGCCTCGGCTGCGGCATTATCGGCATTTCGTCATGATCGAAACAAC 116821 | | ||| | |||||||| | ||||||||| | || ||| ||||||| Sbjct 23153240 GAGCTCGCATTGGCTGCGGTGTCATCGGCATT--GCCAAAATCTAAACAAC 23153192 >seq3603 Length=2672878 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || || |||||||| || || || || ||||| ||| Sbjct 316285 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTG 316226 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | ||| | ||||| | |||||| || || | ||||| | Sbjct 316225 TCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATG 316166 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| || ||||| || || || ||||| Sbjct 316165 GTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq3289 Length=20206255 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||||||||| |||||||| || | ||| ||| | || || | Sbjct 14369589 AAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCA-TCTTCCAA 14369647 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| | |||||||| || ||||| || ||||| ||||| ||| Sbjct 14369648 CTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGAT 14369707 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | ||| | || || | || || || || | |||| ||| || | Sbjct 14369708 C-TTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTAC 14369766 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || |||||||| ||||| ||||| Sbjct 14369767 CCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq3134 Length=2474545 Score = 96.9 bits (106), Expect = 3e-15 Identities = 310/468 (66%), Gaps = 25/468 (5%) Strand=Plus/Minus Query 120341 CGCCAAAGCGCTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCG 120400 |||| | |||| || ||||| || ||||||||| || || |||||||| |||| || Sbjct 574200 CGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACG 574141 Query 120401 AAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTT--AAAGTATTTCGGCTGGCCCAA 120458 |||| | | ||| || ||||| || | | ||| | ||| | || | ||||| Sbjct 574140 AAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGAC---CCCAA 574084 Query 120459 CTGTA-CGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCG-TTC 120516 | | | ||||| || || || ||||||||||| || ||| |||| | ||||| ||| Sbjct 574083 GTTCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATA-AGTGCGCAATTC 574025 Query 120517 ATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCC 120576 ||||| | ||| ||||||| || || | |||||||| |||||| || || Sbjct 574024 ATGCCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCA 573965 Query 120577 TCCTTGAACATGGCGAGCATAGTGTGGCCGGGCATCT-TGT--GTTCGATGCGCG---TT 120630 || | | ||| | | | || || || ||| || | || ||| | | Sbjct 573964 TC---GGAGATG---ATCTCAATGATGC---GC-TCTCTGCAGGGACGCTGCACCAAATG 573915 Query 120631 CGGTAGTA-CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTT 120689 | | | | |||| |||||||| ||||| ||||||||||| || ||||| ||||| Sbjct 573914 CTGGAACATCAGGACAGCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTT 573855 Query 120690 GCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCT 120749 || || ||||||||||| | ||| | |||| | | || || | |||||||| Sbjct 573854 CGAGAAAGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCT 573795 Query 120750 GCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||| |||||| | |||||| || ||||| |||| |||||||| Sbjct 573794 GCCGCTAAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTC 573747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483339041457200