Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq466 208 2e-48 >seq466 Length=100518 Score = 208 bits (230), Expect = 2e-48 Identities = 592/893 (66%), Gaps = 29/893 (3%) Strand=Plus/Plus Query 110279 TTATACTCGTGACTATG-ATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATT 110337 |||| |||||| | || |||| | || ||||| || || || ||||| || | |||| Sbjct 41239 TTATGATCGTGATTTTGGATATA-ATTACTTTGGATTTAAGACACTTGAGCGATCATATT 41297 Query 110338 TACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGA 110397 | ||| | |||||| | || ||||| || || |||||| | | ||||| || | Sbjct 41298 TGCTTAAAATTAATGGCAAAATAGCGGAACGACCACAGCACATGCTAATGCGTGTCGCAA 41357 Query 110398 TTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAA 110457 ||||||| ||||| |||||||| | ||| |||||| ||| || || || || Sbjct 41358 TTGGTATACATGGTGATGATATTGATTCTGCGATTGAAACATATAATTTACTATCGGAAC 41417 Query 110458 AGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGG 110517 | || ||||| | || || || ||| || | || || | ||||| Sbjct 41418 GTTATTTTACACATGCATCACCAACGCTTTTTGCTGCTGCCACAAACCGTCCCCAATTAT 41477 Query 110518 CTTCTTGCTTTCTTCTAGGAATT--AACGATGATTCTATTGAAGGTATTTATGATGCTCT 110575 | || || |||||| || ||| | || |||||||||||||| || | | | | | Sbjct 41478 CATCATGTTTTCTTTTAACAATGGCATCG--GATTCTATTGAAGGAATATTTAAAACAGT 41535 Query 110576 TAAAGAAACTGCTC--TTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGAT 110633 | || | ||| | | || || ||| | ||||| |||||| || | |||||| | Sbjct 41536 -AGAGCAG-TGCGCAATGATCTCCAAATCGGCAGGAGGCATTGGTCTTAATGTTCATTGT 41593 Query 110634 ATTCGCTCAAAAGGAGCAAATAT---CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 ||||| |||| || | ||| || ||| || ||| |||||| ||| | || Sbjct 41594 ATTCGAGCAAAGGGCACCTCTATTTCCGGCACA---AATGGTACTTCAAATGGCTTGGTA 41650 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGA 110747 |||||| | ||||| || ||| | ||| ||||| |||| |||||| || ||| Sbjct 41651 CCAATGCTTAGAGTATTTAACAATGTGGCACGCTATGTCGATCAGGGTGGTGGTAAAAGA 41710 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 || |||| ||||| || || || |||||||||||||| | |||||||| ||||| Sbjct 41711 CCAGGAGCATTCGCTATTTACCTGGAGCCTTGGCATTCAGACGTGTTTGAATTTTTAGAC 41770 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 ||| |||||| ||| || ||||| | || || ||| |||||||||| ||||| Sbjct 41771 CTTAAAAAAAATACTGGAAAAGAGGAACATCGGGCTCGGGATCTATTTTATGCCTTGTGG 41830 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCC 110926 ||| | ||| | || ||||| || ||| ||| || | | || ||||| | |||||||| Sbjct 41831 ATTCCTGATCTCTTTATGAAGCGGGTTGAAGCCAACGAGGAT-TGGTCGTTGATGTGTCC 41889 Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986 || | || ||||| ||||| | || |||| |||||| | | || | || Sbjct 41890 ACACAAATGCCCCGGTCTGCAAGATGTTTGGGGTGAAGAATTTGAAAAATTGTATGTCAA 41949 Query 110987 ATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGAACTTTGGTTCAA 111043 |||||||||||| || | | || | || || |||||| |||||||| Sbjct 41950 ATATGAAAAAGAGGG---GCGACAGAATCGAATTGTTAAGGCTCAATCTCTTTGGTTTGC 42006 Query 111044 AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTA 111102 || ||||||| ||||| || ||||| || ||||| || | | |||||| || | || Sbjct 42007 CATAATTGAATCTCAAGTGGAGACTGGTACCCCTTACATGCTTTTTAAAGACTCGT-GTA 42065 Query 111103 ATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | | ||| |||||| ||| | ||||| || |||| |||||||| ||| Sbjct 42066 ACAGAAAAAGCAATCAACAAAATGTTGGAACTATAAAGTGCAGTAATTTATGC 42118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186607062292330