Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3378 118 7e-22 seq3289 116 2e-21 seq3603 113 3e-20 seq359 96.9 2e-15 >seq3378 Length=5191987 Score = 118 bits (130), Expect = 7e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || | |||| ||| || || |||||||| ||||| Sbjct 4216908 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4216849 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| | || |||| || |||||||| || |||||||||||||||||| | || Sbjct 4216848 AAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4216789 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || | | ||||| || | ||| ||| || ||||| Sbjct 4216788 ATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4216730 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || | ||||| || || || || || || || || |||||||||||| || Sbjct 4216729 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATATTT 4216678 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || | |||| ||| || || |||||||| ||||| Sbjct 4217592 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4217533 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| | || |||| || || ||||| || |||||||||||||||||| | || Sbjct 4217532 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217473 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || | | ||||| || | ||| ||| || ||||| Sbjct 4217472 ATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217414 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 4217413 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217366 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || || ||| || || |||||||| ||||| Sbjct 4217364 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4217305 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| || || || || || |||||||||||||||||| | || Sbjct 4217304 AAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217245 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || | | ||||| || | ||| ||| || ||||| Sbjct 4217244 ATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217186 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 4217185 CTCCAAGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138 Score = 105 bits (116), Expect = 4e-18 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 33514 AAATC--GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGT 33571 ||||| || ||| || | || ||| | ||||| || | |||| ||| || || |||| Sbjct 4218059 AAATCTAGTAACCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGT 4218000 Query 33572 TGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCT 33631 |||| ||||| | || ||| | || |||| || || ||||| || ||||||||||||| Sbjct 4217999 TGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCT 4217940 Query 33632 GATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCG 33690 ||||| | || | ||| || ||||| || || | | ||||| || | ||| ||| Sbjct 4217939 GATCTGGGGGAATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCG 4217881 Query 33691 CTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || | ||||| || || || || || || || || ||||||||||| Sbjct 4217880 GATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || || ||| || || |||||||| ||||| Sbjct 4217136 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4217077 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| || || || || || |||||||||||||||||| | || Sbjct 4217076 AAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217017 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | ||||| || | ||| ||| || ||||| Sbjct 4217016 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4216958 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 4216957 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || || ||| || || |||||||| ||||| Sbjct 4217820 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4217761 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| || || || || || |||||||||||||||||| | || Sbjct 4217760 AAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217701 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | ||||| || | ||| ||| || ||||| Sbjct 4217700 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217642 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 4217641 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594 >seq3289 Length=20206255 Score = 116 bits (128), Expect = 2e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| |||||| || || ||||| || || Sbjct 14369568 CCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAA 14369627 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| || || || || ||||| ||||||||||||||| | || Sbjct 14369628 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGA 14369687 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | || ||||| || | ||| || | ||| || Sbjct 14369688 ATTCCTTCTTTGTCCTGGATCTT-GGCTTTAACATTCTCGATGGTATCCGACGGTTCGAC 14369746 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| ||||| || ||||| || | ||||||||||| || ||||| || Sbjct 14369747 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCATCGT 14369797 >seq3603 Length=2672878 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || | ||| ||| ||||| |||||||| || || Sbjct 316358 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGA 316299 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| |||| ||||||||||||| | || Sbjct 316298 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 316239 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | | |||| || | |||||| | || | Sbjct 316238 AATACCTTCTTTGTCTTGGATTTT-AGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 316180 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| |||||||| ||||| Sbjct 316179 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq359 Length=456481 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || || || || ||||||||||| || Sbjct 66575 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGA 66516 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || |||| ||| || |||||||| |||| ||||||||| ||| | || Sbjct 66515 CAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGG 66456 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || ||| || | || | ||| || || | |||| Sbjct 66455 GATTCCCTCCTTGTCCTGAATCTTGGCCTTC-ACGTTCTCAATGGTATCACTAGGCTCCA 66397 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || | || || || |||||||||||| Sbjct 66396 CCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATA 66347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328649797737600