Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq359 89.7 1e-12 seq3378 87.8 4e-12 seq3289 86.0 1e-11 >seq359 Length=456481 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| |||| ||||| ||| || || |||| Sbjct 65907 AAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAGCCTTCCGATACGATCGAGAAC 65966 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || ||||| || ||| || | || |||||| Sbjct 65967 GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCAGCAGCGTCTGATCTTC 66026 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||||| | ||| | | || |||||| ||||||| ||||| Sbjct 66027 GCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAACATCCAGAAGGAGTCG 66086 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 66087 ACCCTCCAC 66095 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || || ||| |||| ||||| ||| || || |||| Sbjct 66135 AAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCCGATACGATCGAGAAC 66194 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || ||||| || ||| || | || |||||| Sbjct 66195 GTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCAGCAGCGTCTGATCTTC 66254 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||||| | ||| | | || ||||| ||||||| ||||| Sbjct 66255 GCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAATATCCAGAAGGAGTCG 66314 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 66315 ACCCTCCAC 66323 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || || ||| |||| ||||| | ||| || | || Sbjct 66363 AAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGTGATACCATTGAGAAC 66422 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| || ||| || | || ||||| Sbjct 66423 GTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCAGCAGCGTCTGATCTTT 66482 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||||||||| | || ||| | ||||||||| ||||||| || || Sbjct 66483 GCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAACATCCAGAAGGAATCG 66542 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 66543 ACCCTCCAC 66551 >seq3378 Length=5191987 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 4216685 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4216744 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 4216745 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4216804 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||| |||| |||||| | |||||| |||| |||||| || Sbjct 4216805 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 4216864 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||| | ||| Sbjct 4216865 CAGAAGGAGTCCACTTTGCAC 4216885 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 4216913 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4216972 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 4216973 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 4217032 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || ||||||||||| |||||| | || ||| |||| |||||| || Sbjct 4217033 CGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAACATC 4217092 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || ||||| || ||| Sbjct 4217093 CAGAAGGAGTCGACCCTTCATCTGGTT 4217119 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 4217141 CAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACCTTGGAGGTGGAGCCATCCGAT 4217200 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 4217201 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4217260 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || ||||||||||| |||||| | || ||| |||| |||||| || Sbjct 4217261 CGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAACATC 4217320 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || ||||| || ||| Sbjct 4217321 CAGAAGGAGTCGACCCTTCATCTGGTT 4217347 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 4217597 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4217656 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 4217657 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 4217716 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || ||||||||||| |||||| | || ||| |||| |||||| || Sbjct 4217717 CGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAACATC 4217776 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || ||||| || ||| Sbjct 4217777 CAGAAGGAGTCGACCCTTCATCTGGTT 4217803 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 4217369 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4217428 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 4217429 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4217488 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| |||||| | |||||| |||| |||||| || Sbjct 4217489 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 4217548 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||| | ||| Sbjct 4217549 CAGAAGGAGTCCACTTTGCAC 4217569 >seq3289 Length=20206255 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || |||||| | || || ||| || || || |||| Sbjct 14369779 AAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGATACCATCGAGAAT 14369720 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || |||||||||||| || || || | | || || Sbjct 14369719 GTTAAAGCCAA-GATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTTTAATTTT 14369661 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||||||||||||||| | || | | || ||||| ||||||||||||| Sbjct 14369660 CGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAATATCCAGAAAGAGTC 14369601 Query 206364 TACT 206367 |||| Sbjct 14369600 TACT 14369597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181615927671130