Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq466 179 4e-40 seq3134 116 4e-21 seq3378 96.9 3e-15 seq3603 89.7 5e-13 seq3289 89.7 5e-13 seq359 89.7 5e-13 >seq466 Length=100518 Score = 179 bits (198), Expect = 4e-40 Identities = 834/1302 (64%), Gaps = 35/1302 (3%) Strand=Plus/Minus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 ||||| |||||| | | || || ||||||||||| | |||||||||||| ||||| Sbjct 43086 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTA 43027 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 ||||| | ||| || | | ||| || || || | | | || | ||||| || Sbjct 43026 AGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCA 42967 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 || || |||||| ||||| |||||||| || || || | || || ||||| | | Sbjct 42966 ACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATTTTA 42907 Query 146731 ATCATGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGC-CCCTTAACGCTATCTGG 146789 || | ||| | || ||||| |||||||||||| ||| | || || || Sbjct 42906 ATAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTCT-TCGGG 42848 Query 146790 AATACCTTCAATGTTTTGAATAGAGCCCTTG--TGCGCAAAAATAGTGTTTCGTATT-TC 146846 ||| ||| || ||||| ||||| || | |||| || | | |||| | | || Sbjct 42847 TATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCATC 42788 Query 146847 GGGCGTGTAA--AGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGA 146904 | || | | | ||| ||| | | |||| |||| |||| || |||||| Sbjct 42787 ATCCCACAAATCAAGCTCCGTTAAATCACG----CAAT-AAATGAGGATTTACAACTTGA 42733 Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 ||||| || | || || ||||| ||| | || |||| | ||||| || |||||| Sbjct 42732 AACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACTCA 42673 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || ||||| | |||||| || |||| ||| || |||||| || | | ||| || ||| Sbjct 42672 TTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGTTT 42613 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTT--TGCCAGTCCCACATCGACGAGG 147082 | | ||||| | ||| | |||| ||| | | ||||||||| | | | Sbjct 42612 CTAACACCGTGCTGTTTTATG--GACCTTTTAAGATGATCCCAGTCCCAAAGATCTGTTG 42555 Query 147083 GCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACG 147142 | | ||||||||| || ||||| | ||||| || | ||||| ||| | | Sbjct 42554 GTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATATAGG 42495 Query 147143 TAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATA 147202 | || || || || | ||||||||| || || || | ||||||||||| | Sbjct 42494 TTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAGTAAA 42435 Query 147203 TGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCA 147262 | ||||| |||||||| || | | | ||||||||||| || || || | | || Sbjct 42434 TAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAACCTCA 42375 Query 147263 GAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGT 147322 || | || ||||| || || || || | ||| | || ||||| || ||| | | Sbjct 42374 TCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGTAAAT 42315 Query 147323 T-GCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTA 147381 | | | || | || || | |||||| | ||| |||||| || || || ||||| Sbjct 42314 TTGATTTTTTTGCCTCTGGCAA-GGGATAATAGTTTATATCAATTATTTTATTCAGGTTT 42256 Query 147382 CGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACA 147441 |||| |||||||| ||| ||||| | ||| || |||| | |||| | Sbjct 42255 TTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGAT---TTTTCGGC- 42200 Query 147442 CGT-ACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTC 147500 ||| || | ||| | ||| || || || | ||| || || || | || || | | Sbjct 42199 CGTCACAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTTCGTCTGG--C 42142 Query 147501 GCTG--TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGC 147558 |||| |||| || ||||| | ||| | || ||||| ||||| ||| | |||||| Sbjct 42141 GCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGTTCCAACATTTTGT 42082 Query 147559 TGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACT 147618 ||||||||||| | || |||| |||||| || |||||||| || || ||||| ||| Sbjct 42081 TGATTGCTTTTTCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACCAGTCTCCACT 42022 Query 147619 TGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGC-ACCCGCTGCCGATAGCG 147674 || | ||||| || ||||| | | || | || | | | || | | | || Sbjct 42021 TGAGATTCAATTATGGCAAACCAAAG-AGATTGAGCCTTAACAATTCGATTC---TGTCG 41966 Query 147675 GCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG 147734 ||||| ||||| || | ||||| ||||| || || || | ||| || Sbjct 41965 CCCCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCCCAAACATCTTGCAG 41906 Query 147735 GCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCAT 147794 ||||| || | || |||||||||| |||||| |||| || | ||| || ||| Sbjct 41905 ACCGGGGCATTTGTGTGGACACATCAACGACCAATCCTCGTTGGCTTCAACCCGCTTCAT 41846 Query 147795 AAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836 ||| ||||| || | ||||| || || | ||||| || || Sbjct 41845 AAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGC 41804 >seq3134 Length=2474545 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 || || || | ||| ||| |||||||| |||||| || ||||| ||| ||| | ||| Sbjct 573963 GATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCACTGCCGGTCAATTTGATCGGC 574022 Query 47106 ATGAAC-GCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164 ||||| || || | ||||| ||||||||||||||||||||| ||||||||| |||| | Sbjct 574023 ATGAATTGCGCACT-TATGTCCGAATATATTGAGTTTGTGGCCGATCGTCTGCTGGTTGA 574081 Query 47165 GCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTC 47224 || || ||| | || | ||||||||| || ||| | | ||||| Sbjct 574082 ACTTGGGGTCGGCAAACTGTACAACACAAAGAATCCGTTTACATTCATGGAAATGATTTC 574141 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAGCG 47275 | | || |||||||||||||| || |||||| ||| || || ||| |||| Sbjct 574142 GTTGGACGGCAAAACCAATTTCTTTGAGAAAAAAGTGGGCGAATATCAGCG 574192 >seq3378 Length=5191987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | ||||| || ||||||||||||||| || || Sbjct 4218043 ACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGT 4217984 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| | |||||| |||||||| || || || Sbjct 4217983 ACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACC 4217924 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 4217923 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAA 4217864 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 4217863 GGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | | ||||| || || |||||||||||| || ||| Sbjct 4217131 ACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGT 4217072 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || || | |||| | |||||| |||||||| || ||||| Sbjct 4217071 GCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCC 4217012 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 4217011 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAA 4216952 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 4216951 GGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4216909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | | ||||| || || |||||||||||| || ||| Sbjct 4217815 ACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGT 4217756 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || || | |||| | |||||| |||||||| || ||||| Sbjct 4217755 GCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCC 4217696 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 4217695 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAA 4217636 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 4217635 GGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | | ||||| || || |||||||||||| || ||| Sbjct 4217359 ACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGT 4217300 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || || | |||| | |||||| |||||||| || || || Sbjct 4217299 GCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACC 4217240 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 4217239 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAA 4217180 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 4217179 GGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217137 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | ||||| || || |||||||||||| || || Sbjct 4217587 ACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGT 4217528 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| | |||||| |||||||| || || || Sbjct 4217527 ACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACC 4217468 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 4217467 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAA 4217408 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 4217407 GGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365 >seq3603 Length=2672878 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| ||||||||||||||||| | ||| Sbjct 316352 ACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGT 316293 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| | |||| |||||||| |||||||| || || || Sbjct 316292 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACC 316233 Query 132022 TTCTTTATC 132030 |||||| || Sbjct 316232 TTCTTTGTC 316224 >seq3289 Length=20206255 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||||||| | | |||||||| || || |||||||| | ||| Sbjct 14369573 ACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGT 14369632 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || || | | |||| |||||| ||||||||||| || || Sbjct 14369633 GCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCC 14369692 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || ||| | | || | ||||| | ||| || || || | Sbjct 14369693 TTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 14369752 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||||| ||||| ||||| Sbjct 14369753 AGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq359 Length=456481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || ||||||||||| | || Sbjct 66113 ACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 66054 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || || || |||| |||| |||||||| || |||||||| || || Sbjct 66053 GCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCC 65994 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||||| |||||||| || | Sbjct 65993 CTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAG 65934 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||| |||||||| ||| |||||||| Sbjct 65933 GGTGATGGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 65892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476530593130800