Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq3383 100 9e-18
seq3378 98.7 3e-17
seq3191 98.7 3e-17
seq3133 98.7 3e-17
>seq3383
Length=19223366
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1772787 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAAT 1772846
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 1772847 CCCGGGTTTCGGC 1772859
>seq3378
Length=5191987
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 2298401 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 2298460
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2298461 CCGGGTTTCGGC 2298472
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 2305752 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 2305811
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2305812 CCGGGTTTCGGC 2305823
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 2308365 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 2308424
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2308425 CCGGGTTTCGGC 2308436
>seq3191
Length=20611582
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 11210923 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 11210982
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 11210983 CCGGGTTTCGGC 11210994
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 11211387 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 11211446
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 11211447 CCGGGTTTCGGC 11211458
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 11211868 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 11211927
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 11211928 CCGGGTTTCGGC 11211939
>seq3133
Length=4096053
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 1608422 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1608481
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1608482 CCGGGTTTCGGC 1608493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15847254506850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |