Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq466 145 7e-30
>seq466
Length=100518
Score = 145 bits (160), Expect = 7e-30
Identities = 707/1104 (64%), Gaps = 52/1104 (5%)
Strand=Plus/Minus
Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698
|| || ||||| || | ||| || || ||||| || | ||||| |||||||| || ||
Sbjct 43086 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTA 43027
Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758
| ||| | |||||||||| || || |||| || || |||| | || || ||
Sbjct 43026 AGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCA 42967
Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818
|| || ||| | ||||| || ||||| || | | || | || || ||||| ||
Sbjct 42966 ACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATTTT- 42908
Query 136819 AATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877
|||||| ||| | | || ||||| ||||||| | | ||| || | ||
Sbjct 42907 AATAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCGGG 42848
Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT---TCATCATGAGATC 136934
|| || ||||| |||| |||||| | || ||| |||| | |||| |||
Sbjct 42847 TATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCATC 42788
Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACG----AGATGCTGATTTACTACTT 136990
| | | | | |||| | | ||| ||| | ||| ||||||| ||||
Sbjct 42787 ATCCCACAAATCAA-GCTCCGT-----TAAATC-ACGCAATAAATGAGGATTTACAACTT 42735
Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050
|| | || || || | |||| | | || | || |||| | ||||||||||| |
Sbjct 42734 GAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACT 42675
Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110
| ||||| |||| || || ||||| | ||||| |||||| ||| || | ||| || |
Sbjct 42674 CATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGT 42615
Query 137111 TCCGTAAACCGTG------TACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT 137164
| | | |||||| || || | || | || | | ||||| ||| ||||
Sbjct 42614 TTCTAACACCGTGCTGTTTTATGGACCTTT------TAAGATGATCCCAGTCCCAAAGAT 42561
Query 137165 TGTTCGATTGG-GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTT 137223
| |||| | | | ||||||| |||| |||| |||| ||| ||| | ||||||
Sbjct 42560 ----CTGTTGGTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTT 42505
Query 137224 TCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCG 137283
| ||| | ||||| | || | | || | || |||| ||| | | ||
Sbjct 42504 CCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCT 42445
Query 137284 CCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAG 137343
||||||||||||||||| |||||| | |||||| ||||||| ||| || ||
Sbjct 42444 CCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATAC 42385
Query 137344 GGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTG 137403
|| | || | | || |||||||||| ||||| | ||| ||||| ||||| | |
Sbjct 42384 GGAAACCTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGG 42325
Query 137404 TGTTTAAAATTTGATATTTGAG-CGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCT 137462
|| ||||||||| ||| | | || |||| |||||| ||||| || || ||| |
Sbjct 42324 TGCCGTAAATTTGATTTTTTTGCCTCTGGCAAG-GGATAATAGTTTATATCAATTATTTT 42266
Query 137463 ATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCG-AAGCTTT 137521
||| || || || ||||| | | | | || | | || || ||| ||| ||| |||
Sbjct 42265 ATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTT 42206
Query 137522 TAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTT 137581
| | || | |||| | || | ||| || || ||||| || ||||| || |||
Sbjct 42205 T---TCGGCCGTCA-CAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTT 42150
Query 137582 CTGTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTG---TTTCGGATCAC 137636
| || || ||||| || | |||||||| | ||| | ||| ||| ||| ||
Sbjct 42149 C-GT-CTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTT---ATAGT 42095
Query 137637 TCCCAAATTCTTTTGATTG-TTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAG 137695
||| | ||| | ||||||| ||||||| | ||| | |||||| | | ||| || || |
Sbjct 42094 TCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAG-TCTTTAAAAAGCATGTAAGGGG 42036
Query 137696 TTCCGGTTTCGACTTGAGTCTCAA 137719
| || || || ||||||| ||||
Sbjct 42035 TACCAGTCTCCACTTGAGATTCAA 42012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445019123409600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |