Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq466 145 7e-30 >seq466 Length=100518 Score = 145 bits (160), Expect = 7e-30 Identities = 707/1104 (64%), Gaps = 52/1104 (5%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || ||||| || | ||| || || ||||| || | ||||| |||||||| || || Sbjct 43086 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTA 43027 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | ||| | |||||||||| || || |||| || || |||| | || || || Sbjct 43026 AGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCA 42967 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || ||| | ||||| || ||||| || | | || | || || ||||| || Sbjct 42966 ACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATTTT- 42908 Query 136819 AATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 |||||| ||| | | || ||||| ||||||| | | ||| || | || Sbjct 42907 AATAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCGGG 42848 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT---TCATCATGAGATC 136934 || || ||||| |||| |||||| | || ||| |||| | |||| ||| Sbjct 42847 TATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCATC 42788 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACG----AGATGCTGATTTACTACTT 136990 | | | | | |||| | | ||| ||| | ||| ||||||| |||| Sbjct 42787 ATCCCACAAATCAA-GCTCCGT-----TAAATC-ACGCAATAAATGAGGATTTACAACTT 42735 Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050 || | || || || | |||| | | || | || |||| | ||||||||||| | Sbjct 42734 GAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACT 42675 Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110 | ||||| |||| || || ||||| | ||||| |||||| ||| || | ||| || | Sbjct 42674 CATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGT 42615 Query 137111 TCCGTAAACCGTG------TACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT 137164 | | | |||||| || || | || | || | | ||||| ||| |||| Sbjct 42614 TTCTAACACCGTGCTGTTTTATGGACCTTT------TAAGATGATCCCAGTCCCAAAGAT 42561 Query 137165 TGTTCGATTGG-GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTT 137223 | |||| | | | ||||||| |||| |||| |||| ||| ||| | |||||| Sbjct 42560 ----CTGTTGGTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTT 42505 Query 137224 TCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCG 137283 | ||| | ||||| | || | | || | || |||| ||| | | || Sbjct 42504 CCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCT 42445 Query 137284 CCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAG 137343 ||||||||||||||||| |||||| | |||||| ||||||| ||| || || Sbjct 42444 CCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATAC 42385 Query 137344 GGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTG 137403 || | || | | || |||||||||| ||||| | ||| ||||| ||||| | | Sbjct 42384 GGAAACCTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGG 42325 Query 137404 TGTTTAAAATTTGATATTTGAG-CGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCT 137462 || ||||||||| ||| | | || |||| |||||| ||||| || || ||| | Sbjct 42324 TGCCGTAAATTTGATTTTTTTGCCTCTGGCAAG-GGATAATAGTTTATATCAATTATTTT 42266 Query 137463 ATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCG-AAGCTTT 137521 ||| || || || ||||| | | | | || | | || || ||| ||| ||| ||| Sbjct 42265 ATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTT 42206 Query 137522 TAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTT 137581 | | || | |||| | || | ||| || || ||||| || ||||| || ||| Sbjct 42205 T---TCGGCCGTCA-CAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTT 42150 Query 137582 CTGTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTG---TTTCGGATCAC 137636 | || || ||||| || | |||||||| | ||| | ||| ||| ||| || Sbjct 42149 C-GT-CTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTT---ATAGT 42095 Query 137637 TCCCAAATTCTTTTGATTG-TTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAG 137695 ||| | ||| | ||||||| ||||||| | ||| | |||||| | | ||| || || | Sbjct 42094 TCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAG-TCTTTAAAAAGCATGTAAGGGG 42036 Query 137696 TTCCGGTTTCGACTTGAGTCTCAA 137719 | || || || ||||||| |||| Sbjct 42035 TACCAGTCTCCACTTGAGATTCAA 42012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445019123409600