Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3023 100 3e-16 >seq3023 Length=5802038 Score = 100 bits (110), Expect = 3e-16 Identities = 209/312 (67%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930 ||| ||||||||||| || || |||| | | | ||| | ||| || || | Sbjct 3647879 AATGTTGAGCTTGGGAAAAGGCTTGGGGCTACGTTTTATCTGCTGCTGCAGCGGTTCTAT 3647820 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||||| || || ||||| || || || | |||||| | || || || ||||| || || Sbjct 3647819 ATGGTTAAGATAAACGTGAGCATCGCCTATGGTGTGGATGAATTCACCGGGCTTCAGACC 3647760 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 ||||| ||||| | | || |||||||| | ||| ||| ||||||||||| || || Sbjct 3647759 CGTCACATGGGCTATTAAATAAGTGAGCAGAGCATAGGAGGCAATGTTGAAGGGAACACC 3647700 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC----- 147105 || |||||||| | | || || |||||||| || | || || | || | Sbjct 3647699 GAGACCCATGTCAGCGCTGCGTTGATATAGCTGGCAGGACAATTCGCCCTTGGACTGCGA 3647640 Query 147106 -ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164 || | ||||| |||| ||||||||||| |||||||| ||| | ||| || Sbjct 3647639 GACAAAGAACTGAACCAGGCAATGGCACGGCGGTAGCGCCATTTTGGGTATATCCATCGG 3647580 Query 147165 GTTCCAGGCCGA 147176 |||||||| || Sbjct 3647579 ATTCCAGGCGGA 3647568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583389317592000