Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq466 585 4e-162 seq3134 208 1e-48 >seq466 Length=100518 Score = 585 bits (648), Expect = 4e-162 Identities = 1252/1851 (68%), Gaps = 32/1851 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| || ||||| ||||| || ||||| || || |||| || || Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||||| ||| ||| |||| || || | ||||||||| | ||||||||| Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || || |||||||| || |||||||| ||| | |||| | || ||| Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883 Query 68575 CAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGG 68629 || | || || | ||||| ||| || || || | | || ||||||| || | Sbjct 42882 CATACGGTTTTGTACAAATCCCG--GATTTCTTCGGGTATAGATTCTATATTTTGTATAG 42825 Query 68630 ATCCACCATCGGAT----ATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCC 68685 |||| |||| | |||||| ||| || |||||||||| |||||| | |||| Sbjct 42824 ATCC----TCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCC 42769 Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 |||||| | | | | ||| ||||| || | |||||| || || || || |||| | Sbjct 42768 GTTAAATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTT 42709 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 || ||||| || || || || || | || ||||| || |||| ||||| ||||| Sbjct 42708 GTATAAATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTG 42649 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG-TGTTATGATTTT 68864 ||||| || ||||| || || | | ||| ||||||| ||| || |||| | | Sbjct 42648 GATGCTGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTGCTGTTTTA--TGG 42591 Query 68865 ATCTTTTA-GATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATT 68923 | |||||| |||| | ||| ||||||||||| | |||| ||||| | ||| || | Sbjct 42590 ACCTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACT 42531 Query 68924 GTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAG 68983 ||| || ||| || ||| | |||| |||| |||||||| || || |||| | | Sbjct 42530 GTAAAACTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGG 42471 Query 68984 CTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 69043 | ||||||||| || || || || || || ||||| ||||| || || | | ||| | Sbjct 42470 ACAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCA 42411 Query 69044 GATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATC 69103 | ||||||| || || | ||| | | ||||| ||||||||||| || | Sbjct 42410 AAAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACC 42351 Query 69104 CCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAG 69163 | || || |||||||| ||||| | || | |||||| ||| || ||||| | | Sbjct 42350 CTTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGG 42291 Query 69164 GATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCT 69223 ||||||| || ||||| || |||||||| || ||| | || | |||| || || | Sbjct 42290 GATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTT 42231 Query 69224 TTAGTTTGAGAAAATC---AAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATG 69280 | ||||| || || | || | | | | |||||||| || || |||| |||| Sbjct 42230 TCAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATG 42171 Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340 ||| |||||| || |||| || | | || ||| | | || || || |||| || Sbjct 42170 CTAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAAT 42111 Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400 |||| || || ||||| || | |||||| ||||| || ||| ||||||| | ||| || Sbjct 42110 TACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAA 42051 Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460 |||| || | || |||||||| || | |||||||| || || | ||||| || Sbjct 42050 AAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAA-GAGAT 41992 Query 69461 T-AGCATTTATTA--CGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTT 69517 | ||| || | | || | ||| ||| |||||||||||||| ||| | || Sbjct 41991 TGAGCCTTAACAATTCGATTCTGT--CGCCCCTCTTTTTCATATTTGACATACAATTTTT 41934 Query 69518 CGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACC 69577 | ||||| || ||||||||||| | || || || |||| | |||||||||||| |||| Sbjct 41933 CAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACC 41874 Query 69578 ACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGA 69637 | | || | | | ||| || |||||||| ||||| |||||||| | || ||| | Sbjct 41873 AATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATA 41814 Query 69638 GATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAA 69697 |||| | | | || ||| || ||||| |||||||||||||| || | ||| || | | Sbjct 41813 GATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACA 41754 Query 69698 TATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCT 69757 || |||||||| || || || || || || | |||| |||| |||| || |||| Sbjct 41753 CGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCT 41694 Query 69758 GATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATT 69817 |||| | || | || || ||| | ||||| ||||| || | | ||||| || Sbjct 41693 GATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAG 41634 Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877 |||||||||| || |||||| | | || |||| |||||| | || | ||||| | Sbjct 41633 TACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAA 41574 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937 | ||||||||| ||| ||||| | || || | | | ||| | | |||| || || | Sbjct 41573 TGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAA 41514 Query 69938 TGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 | ||| | ||| ||||| ||||||||| || | ||| || | | || | Sbjct 41513 TAGAATCCGATGCCATTGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCA 41455 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 ||| ||| | || || ||||| || || || | ||| || || | ||| |||||| Sbjct 41454 GCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTT 41395 Query 70057 TCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||||| || || || ||||| ||| ||| || || || ||||||||||| | ||| || Sbjct 41394 TCAATCGCAGAATCAATATCATCACC-ATGTATACCAATTGCGACACGCATTAGCATGTG 41336 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||| |||||||| | |||| ||| ||||| | || |||||| || || || || Sbjct 41335 CTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTT 41276 Query 70176 AAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 ||| ||||| || || ||| ||| || | || ||||| || |||| || Sbjct 41275 AAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225 >seq3134 Length=2474545 Score = 208 bits (230), Expect = 1e-48 Identities = 550/837 (66%), Gaps = 7/837 (1%) Strand=Plus/Minus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 || |||||| || ||||| || || |||||| || ||||| |||||||| ||||| Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || |||||||||| ||||||||| ||| || || ||| | || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | || | ||| || ||||| || || ||| ||| | | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || || | || || || || || || || |||||||| | ||| ||| || || || Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 39557 GTTATTATCG--ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614 | || ||| ||| | | ||| || || | |||| ||||| | ||||| | Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAACATCA 573904 Query 39615 AGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 39674 | || ||||| ||||| || ||||| || | || | |||||| || || |||| Sbjct 573903 GGACAGCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGA 573844 Query 39675 GTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGA 39734 | || ||||| || |||||||| || |||||||| || | |||||| || ||||| Sbjct 573843 GGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGA 573784 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---GTAACTTGTATCATTAT 39791 ||||||| || || || |||||||| | | | ||| || || | || | | Sbjct 573783 AGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGG 573724 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||||| | ||||| || || ||| ||| || ||||||||||| || |||| Sbjct 573723 ATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCAT 573664 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 |||| ||||||| | || ||| | |||||| || || | | || |||| Sbjct 573663 TAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACA 573604 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| || |||| || || || || |||||||| || || || || | || || |||| Sbjct 573603 TTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAA 573544 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || || || | ||| | || ||| ||| || || || || ||||| |||| Sbjct 573543 TCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGG 573484 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 ||||||| |||| |||||| ||| |||| || | | ||| | ||||| Sbjct 573483 CAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGT 573424 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 || | | ||| || || | ||| ||||| || | ||||| || || ||||| |||| Sbjct 573423 CAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCCT 573367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686792626549200