Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3134 187 2e-42 seq3023 131 1e-25 seq3378 95.1 1e-14 seq3133 93.3 3e-14 >seq3134 Length=2474545 Score = 187 bits (206), Expect = 2e-42 Identities = 496/746 (66%), Gaps = 20/746 (3%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| |||| |||||||| || ||| || || || || || ||| |||| || ||| Sbjct 573468 GTTCTGGCCTTTTTTGCCGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTT 573527 Query 43910 GCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 || |||||||| ||||| ||| || || || || ||||| ||||| || ||||| || Sbjct 573528 AGCCAGGAAGTTCAGATTAC-AGAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGA 573586 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||| | || |||||||||||||| | ||||| || || || || ||| ||| | Sbjct 573587 GAATGTCCACTCGGAAATGTACAGCGTCCTGATTGACACATATATACGCGATCCGCATCA 573646 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 | || | |||||||| || |||||| | || || |||| | || || ||||| Sbjct 573647 GCGTGATTATCTATTTAATGCAATTGAAACAATGCCGGCAGTTAAGCGGAAGGCCGACTG 573706 Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGC 44145 ||| ||| |||||| || || | || ||||| || || | |||| ||||| Sbjct 573707 GGCGCTTTCTTGGATATCCTCTAAGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGC 573766 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 | ||| || ||||| |||||| || ||||| | || |||||| | ||||| || Sbjct 573767 TGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAGCG 573826 Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 || | ||||| || | || || || || || | || || || || || | || Sbjct 573827 TGGCCTTATGCCCGGCCTCACTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTGCA 573886 Query 44266 TTGCGATTTTGCT-TGCT--TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAA 44322 |||||| |||||| | || |||| | | || | | || || ||| || | | Sbjct 573887 TTGCGACTTTGCTGTCCTGATGTT-CCAGCATTTGGTGCAG-CG---TCCCTGCA-GAGA 573940 Query 44323 GACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382 | || | || || | || || || | || ||||| || ||| | || || Sbjct 573941 GCGCATCATTGAGATCATCTCCGATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGC 574000 Query 44383 ATTACCTGTAAATTTAATAGGAATGAAT---GAACTTTTGATGAACCAATATATTGAATA 44439 | | || || ||||| || || |||||| | |||| ||| | |||||||||| | Sbjct 574001 ACTGCCGGTCAATTTGATCGGCATGAATTGCGCACTT---ATGTCCGAATATATTGAGTT 574057 Query 44440 CATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCC 44499 | || |||||| | || | ||||| || || |||| || | | | || || Sbjct 574058 TGTGGCCGATCGTCTGCTGGTTGAACTTGGGGTCGGCAAACTGTACAACACAAAGAATCC 574117 Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 |||| || ||||||| ||||||||||| |||||||| || || ||||| ||| || Sbjct 574118 GTTTACATTCATGGAAATGATTTCGTTGGACGGCAAAACCAATTTCTTTGAGAAAAAAGT 574177 Query 44560 TGGAGAATATCAGCGAATGGGCGTCA 44585 || |||||||||||||||||||||| Sbjct 574178 GGGCGAATATCAGCGAATGGGCGTCA 574203 >seq3023 Length=5802038 Score = 131 bits (144), Expect = 1e-25 Identities = 351/531 (66%), Gaps = 22/531 (4%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||| ||| || || ||||| ||||| ||||||||||| |||| ||| || ||||| || Sbjct 3647403 GATCGGGCTGTCGGGGATCTGGGTCCGGTTTATGGATTCCAGTGGCGTCACTTTGGCGCC 3647462 Query 40914 AAATATGACACT----ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTG 40969 | ||| |||| ||| || ||||| ||| | || | || ||||||||| Sbjct 3647463 GAGTATCGCACTTGCGATG-AC---GATTACACCGGCCAGGGTGTTGACCAATTACAGCA 3647518 Query 40970 CGTTATAGATACGATTAAATCCGATCCC---GATAGCCGACGTATAATATTGTGCGCGTG 41026 || ||| ||||||| | || ||||| ||| || || || || ||| ||| || Sbjct 3647519 AGTGATACATACGATACGAACCAATCCCTCGGAT---CGTCGCATTATCATGTCCGCCTG 3647575 Query 41027 GAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTA 41086 ||| || | ||| ||| ||||| | || || || |||| | |||||| | Sbjct 3647576 GAATCCGATGGATATACCCAAAATGGCGCTACCGCCGTGCCATTGCCTGGTTCAGTTCTT 3647635 Query 41087 CGTTTG------CAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGG 41140 || | ||| || ||| |||| || || | |||||| | | ||||||||| Sbjct 3647636 TGTCTCGCAGTCCAAGGGCGAATTGTCCTGCCAGCTATATCAACGCAGCGCTGACATGGG 3647695 Query 41141 ACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGT 41200 || || || || || ||||| || |||||||||||||| ||| | || || || || Sbjct 3647696 TCTCGGTGTTCCCTTCAACATTGCCTCCTATGCTCTGCTCACTTATTTAATAGCCCATGT 3647755 Query 41201 TACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAA 41260 || | | || || |||||||| | ||||| |||| |||| || |||| |||| Sbjct 3647756 GACGGGTCTGAAGCCCGGTGAATTCATCCACACCATAGGCGATGCTCACGTTTATCTTAA 3647815 Query 41261 TCACATAGAGCCGTTAACAG-AACAACTGACACGAAAACCTAGACCATTTCCAACGCTAC 41319 || ||||| ||| | ||| | || | | ||| | || | || ||||| | ||| Sbjct 3647816 CCATATAGAACCGCT-GCAGCAGCAGATAAAACGTAGCCCCAAGCCTTTTCCCAAGCTCA 3647874 Query 41320 TTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTG 41370 ||||| ||| ||| ||| || || || |||||| ||| ||||||| Sbjct 3647875 ACATTAAGCGCCAGGTTACAAATATCGAGGACTTTTGCTACGAGGATTTTG 3647925 >seq3378 Length=5191987 Score = 95.1 bits (104), Expect = 1e-14 Identities = 193/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || ||||| || | || | | || || || || | ||||| | |||| Sbjct 1785573 CCGAAGATCGTCAATGGGCCGCAGATACTCGACAAGTACGTGGGCGAGTCGGAGGCAAAT 1785632 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || ||||| |||| || || || || || || | || ||| | || | ||| || Sbjct 1785633 GTGCGACGGCTGTTCGCCGAGGCCGAGGAGGAGGAGAAGCGTCTGGGCCCCAACAGCGGG 1785692 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 ||||||| || || | ||||| | ||||| || || ||||| | || || | || Sbjct 1785693 CTGCACATCATCATCTTCGATGAGATCGACGCCATATGCAAGCAGCGCGGCTCCGTTGCG 1785752 Query 19609 ------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || || |||||||| || |||||||| || ||| | || | |||||||| Sbjct 1785753 GGCAACAGCGGTGTCCATGACACCGTCGTCAATCAGCTGCTGACCAAGATCGACGGTGTG 1785812 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | || ||||| |||||| | || ||||||||||| ||| | | ||| Sbjct 1785813 GATCAGCTGAACAATATTCTGGTAATTGGCATGACCAATCGCCGGGA 1785859 >seq3133 Length=4096053 Score = 93.3 bits (102), Expect = 3e-14 Identities = 330/511 (65%), Gaps = 16/511 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| || || || | ||| || | |||||||| || ||||||| | || Sbjct 1654339 CCCAAGATTGTGAACGGGCCGCAGATCCTAGACAAATATGTGGGCGAATCGGAGGCCAAC 1654280 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 |||| || |||| || || || || || || | || ||| | |||| || || Sbjct 1654279 ATACGCCGCCTGTTCGCCGATGCCGAGGAGGAGGAGAAGCGTCTCGGGCCGAACAGCGGA 1654220 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG----G 19604 |||||||| | || | ||||| | ||||| || || ||| | || |||| | Sbjct 1654219 CTGCACATTGTCATCTTCGATGAGATCGACGCCATTTGCAAGGCGCGCGGCTCTGTGGCG 1654160 Query 19605 TGTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || ||| || || ||||| || |||||||| || ||| | || | || || || Sbjct 1654159 GGCAACAGTGGCGTCCACGACACAGTGGTCAATCAGCTGCTGGCCAAGATTGATGGCGTG 1654100 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| || || | || ||||||||||| ||| | ||| | || || Sbjct 1654099 GAGCAGCTGAACAACATACTGGTCATTGGCATGACCAATCGCAGGGATATGATCGATGAG 1654040 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | ||||||||||| | || | | || ||||| | | |||||||| Sbjct 1654039 GCGCTGCTGCGACCCGGTCGTCTTGAGGTTCAAATGGAAATCAGTCTGCCCGATGAGAAG 1653980 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAA---AATAACCTTT 19837 ||||| || | || | |||||||||| || | ||||| || ||||| || Sbjct 1653979 GGACGCGTTCAGATACTCGACATACATAC--GAAGCGTATGCGCGAATTCAATAAGATTG 1653922 Query 19838 TAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAG 19897 | |||||| ||| | || ||||| || ||||| |||| ||||| || | Sbjct 1653921 CCA---GCGATGTGGATAATAAGGAGATTGCCGCATGCACCAAGAACTTCAGCGGTGCCG 1653865 Query 19898 AACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | | ||||| | ||| | |||||||| || Sbjct 1653864 AGTTGGAGGGTCTGGTGCGTGCCGCCCAGTC 1653834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397390460747650